BAC Information

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BAC

Clone NameMSMg01-349K05
Chromosome7 (Build37)
Map Location 29,487,475 - 29,487,971
singlet/doubletsinglet
Overlap genenone
Upstream geneC030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27
Downstream geneFbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349K05.T7 (MSMg01no349_k05.b1)MSMg01-349K05.TJ (MSMg01no349_k05.g1)
ACCAG461445AG461446
length724746
length of high quality
(start - end)
505 (71 - 575)508 (71 - 578)
definitionCHROMAT_FILE: MSMg01no349_k05.b1 PHD_FILE: MSMg01no349_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:18 2005CHROMAT_FILE: MSMg01no349_k05.g1 PHD_FILE: MSMg01no349_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATTCTGATCCGCATTAACAGTGGCCGCCCTGCATCTTAAATGA
TATGGCCAAGTATGTATCAGTTCAGTAAAATTAGCAGTCGGAGGGCCAAC
TACAGTTCTTTAAAACAGGATGCGCTCGTGATTTGACTCATTCGCTAGGA
TCGCTGGAGGATGTAAGAAGCCCCCAGACCTCAGCCCGACTGACTCCCAT
TCAGAACATAGACAGCAGCACCTGCCTAAGGTAAAGTGAACAGCTAATCC
CAGAGAGCCTGCAGTTCTGGGAAAGCCTCTAAATGTGCTAACCTTGCCTT
TGGCTCCTGCACTTTTGATTCTGGCTAACAGTTCTTGTTAGCTGAAGCAA
GTCAATCGGAGATGTGGTTTTTGTACTTAAAAGCTCACTCTGAGAAAGGC
TCAGTGCTACCCTGGGATCTGGAACACCCGCTGCAGTCGCCTACTGCCTA
ATAAAGACTTCCTATTGGCTTAAATCAGGTCCGAGTAGTCTTCTCTGGTG
GGTACCCCGTAATGATAGTAAGTTCCAGGATAGCCAGGGTTAAAGAGAGA
GACCCTGTCTCAAACAAAACAGATCATCTTTTGCTGTTGCCTTTGTTGGT
TTTCATGACAGGGTTTCTCTGGTTTACCCTGGTTGTTCTTGGACTTCGCT
TTGGATACCACGTTTGGTTCTTAN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGGAATTCAGGCTAGAATAAATGGAGATTCACT
GGGGACATAGAGGACTCAGGAGCTGAGCAGAGGTAGCCAGCCACATAGAT
GAAATCAGGATGAAATAAAAGGAGAGCTGTGCCCAGGAACACTGAGGAGG
CAGATGTGAACCAGCAGAGAGCAGAACTCAGGCTAGAATAAAAAGGAGAT
TCGCCCCAGACTTGGACACATGAAGCTGAGGAGTGGTAGGTAACTAACCA
GGTGGAAGACACTGAATAGTTGGAGTGTTTTATATAAGTTATGAGCTAGT
CAGGGCTTATGGCTTTGGCATTTATGAATAAATGATTAGTCTCCGAGTCG
TCATTCCGGGAGCAGGGGCTGGGAGGAAAAACGGATTTATTTTCTTACAG
AGAACACCGCTCGAACGGAAGTGTGCCTTCTATACATTTTATTCTTGATC
AAGAGTAAATGCTAAGAAGGGTCAAACACACAGAAACAGGAAGTGCATTG
GGCCTTTTTGTTTTTACTTCTAACTCAGGTGGCCTGTTGGCTGAGGTCCC
ACTTCACGGCCTTAATTCATAGGCTTGTCTGACAAGAATTGGCTGGTATA
CAGACAATGCCCTTTCCTGTTTGTGTGTTTGCTCGCTTGTTTGTACAAGC
CTTGACTGTCTTGGCACTCTCTTTGTAGATCAGTTTTGCTTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_k05.g1 MSMg01no349_k05.g1 CHROMAT_FILE:
MSMg01no349_k05.g1 PHD_FILE: MSMg01no349_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:18 2005
         (508 letters)



>mm_chr7_29487279_29488186
          Length = 908

 Score =  824 bits (426), Expect = 0.0
 Identities = 480/500 (96%), Gaps = 8/500 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcaggctagaataaatggagat----tcactggggacatagaggactcaggagctga 56
           |||||||||||||||||| ||||||    |||||||||||||||||||||||||||||||
Sbjct: 197 aattcaggctagaataaagggagatagattcactggggacatagaggactcaggagctga 256

                                                                       
Query: 57  gcagaggtagccagccacatagatgaaatcaggatgaaataaaaggagagctgtgcccag 116
           ||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||
Sbjct: 257 gcagaggtagccagccacatagatgaactcaggatggaataaaaggaaagatgtgcccag 316

                                                                       
Query: 117 gaacactgaggaggcagatgtgaaccagcagagagcagaactcaggctagaataaaaagg 176
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 317 gaacactgaggaggcagatgtgaaccagcagagagctgaactcaggctagaataaaaagg 376

                                                                       
Query: 177 agattcgccccagacttggacacatgaagctgaggagtggtaggtaactaaccaggtgga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 377 agattcgccccagacttggacacatgaagctgaggagtggtaggtaactaaccagatgga 436

                                                                       
Query: 237 agacactgaatagttggagtgttttatataagttatgagctagtcagggcttatggcttt 296
           |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||
Sbjct: 437 agacactgaatagttggagtgggttaaataagttatgagctagtcagggcttatggcttt 496

                                                                       
Query: 297 ggcatttatgaataaatgattagtctccgagtcgtcattccgggagcaggggctgggagg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggcatttatgaataaatgattagtctccgagtcgtcattccgggagcaggggctgggagg 556

                                                                       
Query: 357 aaaaacggatttattttcttacagagaacaccgctcgaacggaagtgtgccttctataca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 557 aaaaacggatttattttcttacagagaacaccgctcgaacggaagtgtgtcttctacaca 616

                                                                       
Query: 417 ttttattcttgatc-aagagtaaatgctaagaagggtcaaacacacagaaacaggaagtg 475
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttttattcttga-ctaagagtaaatgctaagaagggtcaaacacacagaaacaggaagtg 675

                               
Query: 476 cattgggcctttttgttttt 495
           |||||||| ||||| |||||
Sbjct: 676 cattgggc-ttttt-ttttt 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)