BAC Information

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BAC

Clone NameMSMg01-350C04
Chromosome7 (Build37)
Map Location 148,667,519 - 148,883,609
singlet/doubletdoublet
Overlap geneTspan4, Chid1, Ap2a2, Muc6, LOC100039649
Upstream geneOlfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l
Downstream geneMuc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350C04.T7 (MSMg01no350_c04.b1)MSMg01-350C04.TJ (MSMg01no350_c04.g1)
ACCAG461822AG461823
length752755
length of high quality
(start - end)		445 (53 - 497)418 (84 - 501)
definitionCHROMAT_FILE: MSMg01no350_c04.b1 PHD_FILE: MSMg01no350_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:58 2005CHROMAT_FILE: MSMg01no350_c04.g1 PHD_FILE: MSMg01no350_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,667,519 - 148,667,959)(148,883,192 - 148,883,609)
sequence
TGCTCACTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTTTTTTTACCTTAGAAAACCTCGTGGACACCTCACC
CTCCCAGGCACCGCGGGCTCCCTAAGGCGCTTGAAAGCTAAAGCCGCTCA
AGTTGCCACCAACAGCAATTGGGTCACGTCTTCATTTCCTCGGGGCTTTG
CACATCATTGATGTGCTTGGAGATTTGCTGCCGAACGGGCAGCGGGCCTG
TTGGATGTAGTCTGGGGTGCAGGTTTGGGGTCGAGAGCTGCTGCGGTGTC
ATTCCCGACCCAGTGCCATCAAACGCTTCCCCTGTCCTTCAGCTGCATCT
TCTTGGGAGACCCCGGGAGGGTAACTGGGAGGTGGGGGCTCGGGGTCGCT
GCGATTGGCCGGTGGGGCGGGGTCCTCGAGGGGCGGGGCCGAGCTGGATT
GGCCGGGCGCTCGCGGGGCGCAGCGGGCCGGCCCGCAGGTGTCTGGCCGC
GGGGTGGGAGCCCGCTCGCTGTTACCGCGTGTCCGGCGAGGNGTGGGAGC
TCGTCGGCGTGGTGCGCATGCATCGTCCGGTAACTCTTGTCGTAGACTCC
TTATTACTATTGTTTCCCATTGCCCCGGCTCACACCCACCACTCTCCCCC
ACAACCTTCCTCATCTCTCTTCATATCACTATCTCGTATTTTATTCAAAC
CTTCCTTATATAACAAGGCACCCTATTCTTTTCCCTCATATTACCCCCCA
CN

NNNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCACCAAGTAAGTA
GGGAGGAGAAACAAGACTCAAACTTGTGGCCATACATGGGCAGTATCCAC
TTACTGTGGCCAATCAGTTTGACCTGGGTACATTGCAGCCTCCCGTTCCG
GCAAATGCTATGAAAGAGAAGTGGGAAGGGATGAATGGGGCCCAGGTCTG
TGTCCACACAGGACAGATGCCAGCCAGGCCACTCTCAGAACCTCACCTCT
GGCACCTCTGCACCATTTGAGAGCCTCAGGTCCCATGAGTACCCCCCCCA
TTTTTTCACTTGGGTTAGAGATTCAAGAGAAGCCACCTCCCCACTTTATG
GGCCCCTTGCCAAGTCCAGGACACTCACCAGCGCTCCTCCTGCCTCAGAA
TCACATCTCCTGCTTCCAGGTAAAGACCATGGTGGTAGCAGGAACACTTA
GCCAAGGGCACACAGCGGCCTTTCTCATCCATGAAGGTATGGTCAGGGCA
GCCACAGCCTTCCACAGGTGCAAATCCCTTGAGGCAGTGGCTGTCGCCTT
CTGAAAATGACCGGCCAGGTCTGCTGGCCAATGTCCCCGTTCGAAATGAA
TATTCGCTAATCTGGGTAACTGTTGCATCTTTCTTGCCCCGCTTAATAAA
GCCCGGGAGTATATGACGCCCATTTGTTTCCATCCTATTTCCCCTTGCCT
CCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_c04.b1 MSMg01no350_c04.b1 CHROMAT_FILE:
MSMg01no350_c04.b1 PHD_FILE: MSMg01no350_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:58 2005
         (445 letters)



>mm_chr7_148667315_148668159
          Length = 845

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctttttttaccttagaaaacctcgtggacacctcaccctcccaggcaccgcgg 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttttttaagttagaaaacctcgtggacacctcaccctcccaggcaccgcgg 264

                                                                       
Query: 65  gctccctaaggcgcttgaaagctaaagccgctcaagttgccaccaacagcaattgggtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctccctaaggcgcttgaaagctaaagccgctcaagttgccaccaacagcaattgggtca 324

                                                                       
Query: 125 cgtcttcatttcctcggggctttgcacatcattgatgtgcttggagatttgctgccgaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtcttcatttcctcggggctttgcacatcattgatgtgcttggagatttgctgccgaac 384

                                                                       
Query: 185 gggcagcgggcctgttggatgtagtctggggtgcaggtttggggtcgagagctgctgcgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggcagcgggcctgttggatgtagtctggggtgcaggtttggggtcgagagctgctgcgg 444

                                                                       
Query: 245 tgtcattcccgacccagtgccatcaaacgcttcccctgtccttcagctgcatcttcttgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtcattcccgacccagtgccatcaaacgcttcccctgtccttcagctgcatcttcttgg 504

                                                                       
Query: 305 gagaccccgggagggtaactgggaggtgggggctcggggtcgctgcgattggccggtggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagaccccgggagggtaactgggaggtgggggctcggggtcgctgcgattggccggtggg 564

                                                                       
Query: 365 gcggggtcctcgaggggcggggccgagctggattggccgggcgctcgcggggcgcagcgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcggggtcctcgaggggcggggccgagctggattggccgggcgctcgcggggcgcagcgg 624

                                
Query: 425 gccggcccgcaggtgtctggc 445
           |||||||||||||||||||||
Sbjct: 625 gccggcccgcaggtgtctggc 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_c04.g1 MSMg01no350_c04.g1 CHROMAT_FILE:
MSMg01no350_c04.g1 PHD_FILE: MSMg01no350_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:58 2005
         (418 letters)



>mm_chr7_148882992_148883809
          Length = 818

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggcaccaagtaagtagggaggagaaacaagactcaaacttgtggccatacatgggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agggcaccaagtaagtagggaggagaaacaagactcaaacttgtggccatacatgggcag 559

                                                                       
Query: 61  tatccacttactgtggccaatcagtttgacctgggtacattgcagcctcccgttccggca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 catccacttactgtggccaatcagtttgacctgggtacattgcagcctcccgttccggca 499

                                                                       
Query: 121 aatgctatgaaagagaagtgggaagggatgaatggggcccaggtctgtgtccacacagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatgctatgaaagagaagtgggaagggatgaatggggcccaggtctgtgtccacacagga 439

                                                                       
Query: 181 cagatgccagccaggccactctcagaacctcacctctggcacctctgcaccatttgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagatgccagccaggccactctcagaacctcacctctggcacctctgcaccatttgagag 379

                                                                       
Query: 241 cctcaggtcccatgagtaccccccccattttttcacttgggttagagattcaagagaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cctcaggtcccatgagtaccccccccattttttcacttgggttagagattcaagagaagc 319

                                                                       
Query: 301 cacctccccactttatgggccccttgccaagtccaggacactcaccagcgctcctcctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacctccccactttatgggccccttgccaagtccaggacactcaccagcgctcctcctgc 259

                                                                     
Query: 361 ctcagaatcacatctcctgcttccaggtaaagaccatggtggtagcaggaacacttag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctcagaatcacatctcctgcttccaggtaaagaccatggtggtagcaggaacacttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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