BAC Information

Click to search

BAC

Clone NameMSMg01-350J18
Chromosome7 (Build37)
Map Location 6,465,876 - 6,466,053
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348
Downstream geneOlfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350J18.T7 (MSMg01no350_j18.b1)MSMg01-350J18.TJ (MSMg01no350_j18.g1)
ACCAG462181AG462182
length791817
length of high quality
(start - end)
451 (48 - 498)182 (80 - 261)
definitionCHROMAT_FILE: MSMg01no350_j18.b1 PHD_FILE: MSMg01no350_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:35 2005CHROMAT_FILE: MSMg01no350_j18.g1 PHD_FILE: MSMg01no350_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCATACTGGTAACGAGCCCTATGAATGTAACGAATGTGGGAAG
ACCTTTAGGGAGAGTTCCCAGCTGACTATTCATCAGAGAAACCACACGGG
AGAAAAACCTTTTGAATGTAAGCAGTGTGGTAAATTTTTCAATAGAAGTA
CCTATCTTGCCAGACATCAGAAAATCCATACAGGAGAGAAACCTTATGAG
TGTAACGAATGCGGCAAAACCTTCACACGTGCTGCCTATCTTATAAGACA
CAAGAGGGTCCATACTGGAGAGAAGCCTTACAAATGTGCGGAATGTGGAA
AGGCATTTGGTGATGGCTCCTCCCGTGCTCAGCATCAGAGACTTCACACT
GGTCAGAGGCCCTATGTATGTGAGAAATGTGGAAGGGCCTTCAGAAGAAA
GTCATCCCTTAATTGCCACCAAAGGTATCACACTGGAAAGAAACTGTAAA
ACTGTGTCCCCCATGGCAAACCCTTTTACCGCCTACGAACCTGTAGCGTT
CATCAGAGAATTTATCTTTTCAACCAGGTTGGTCACTCGGACCCTACATG
GGAAGAATTCCCACAGGGCTCAAGAATTCTTTAGAATGTAAAGGAAGGCG
CAAAAACTTTTCTTTTAATGTCCCCTAATCCCCCCTTCTCTTGGTGAGGT
TTTTTTTGTGATACTCTCTCTAGATATCCCCTCCTTGCTCTTCTTATCTC
TTGTTATTTCTTTTCACTACCATTTTCCTTTTAATCATCGT
NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGATCTAATCTTACCTGAA
GTTTGATCTACTCCCCTTTGTGAACAAATAAATTCACTTCTACTAAAGCT
TGTCTGGGTTGAGTTTCCTATCTCTTGGAATGACTCCTTAATTTAGCACT
AACAACTAGCCTAGGACTTGAGAGGGAATGATGGTGATGGTGGTGATGAT
GATGATGNNNNCNNNNNCCCCCNCNCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCNNCCCCCCCCCCTCTTTCCCTTCTTTTCTTCTTTCTCT
TCTCCCCTCTTTCTTTTCTTTTTTTCTCTTTTTTTCTCTTCTCTTTTCTT
TTCTTCTTTTTTTCCCCCCCCCCTTCCCTCTCCTTCTTTTTCTTTTTCCT
TTCTTTCTTTCTTCTTTCTTCTTTTTTTCCTTTCCTTTTTTNTTTTCTCC
TTTCCCCTTTTTCTTTCCTTTCTTTCCTCTCTCTTTCTTTTTTCTCCTTC
CCTTTCTTTCCTTTTTTTCCCTTCTCTCTTTTTCTCCTCCTTTCTTTCTT
TTTTCCCCTTCTCTTTCTCTCTTCCTTCTTTTTTCTTTTTTCTCTTCTTC
TTTTCTTTTTTTTCTTTCTTTTTCTTCTCCCNCTTCTTCTTTTTTCNTCT
TTCCTTTCTCNTCTTCCCTCCTTTCTTTTTCTTCTTTCTTCTTCTTTTTT
TTCTTCTTTCTCTTTCTTNTCTCCTTCCTTTTCTTTTTTTTTCTTCTCCC
CCTTTTCCTTCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_j18.g1 MSMg01no350_j18.g1 CHROMAT_FILE:
MSMg01no350_j18.g1 PHD_FILE: MSMg01no350_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:35 2005
         (182 letters)



>mm_chr7_6465706_6466287
          Length = 582

 Score =  329 bits (170), Expect = 7e-95
 Identities = 176/178 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggatctaatcttacctgaagtttgatctactcccctttgtgaacaaataaattcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 348 ctggatctaatcttacctgaagtttgatctactcccctttgtgaacaaataaattcattt 289

                                                                       
Query: 61  ctactaaagcttgtctgggttgagtttcctatctcttggaatgactccttaatttagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 288 ctactaaagcttgtctgggttgagtttcctatctcttggaatgactcctgaatttagcac 229

                                                                     
Query: 121 taacaactagcctaggacttgagagggaatgatggtgatggtggtgatgatgatgatg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 taacaactagcctaggacttgagagggaatgatggtgatggtggtgatgatgatgatg 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)