BAC Information

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BAC

Clone NameMSMg01-350K02
Chromosome7 (Build37)
Map Location 133,251,427 - 133,251,694
singlet/doubletsinglet
Overlap geneXpo6
Upstream geneLOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l
Downstream geneSbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350K02.T7 (MSMg01no350_k02.b1)MSMg01-350K02.TJ (MSMg01no350_k02.g1)
ACCAG462196AG462197
length787807
length of high quality
(start - end)
274 (53 - 326)271 (85 - 355)
definitionCHROMAT_FILE: MSMg01no350_k02.b1 PHD_FILE: MSMg01no350_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:37 2005CHROMAT_FILE: MSMg01no350_k02.g1 PHD_FILE: MSMg01no350_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTGGCTTTCAAAACCTGGTGAGCTCAGTCCCGTGCCT
TCCCAAGCCCTGACCTTCTGTGAATGGCAATGCTTGGAGTGACAATCTTG
GAATTTTGATTTCTTTCAAAAACAGAGAAGCCGGGGGTGGTGGCGCACAC
CTTTAATCCCCGCACTCGGGAGGTGGATTTCTGAGTTCGAGGCCAGCCTG
GTCTACAAGGTGAGTTCCAGAACAGCCAGGACTATACAGAGAAACGCTGT
CTCGAAAAAAAAAAAAAACAAAACTTTTTTTTTTTCCAACCAAACAAAAA
ACCCCAGAGAAATGGTTTTCATGTCAATCCCAGGTGTGGGGTGTGGCGGC
TTCAGACTGCCCACAGCAGCTGACTACGAGTTCTTCTTGCTTTAGCTGGG
GCAAGATTTTGTCAGCTGCAGATAGTTTCTGCGATTGTGTGGTACTTGGA
ACTCTGGTAACTTTTTTGAAGCCATCTAAACTCTACTCCCTCGATATGCC
ATTTGCTCCCATACCCCCCCCCATGATTGCCTCTTTTTTCTTTACTTCTC
TGCCCTATTTATACATAACCCCCTTCTTTAATCTCGTCACCCCTTTTTCT
CCCCACTTAATCTTATACCTTTTCGATTTTTTCTTATACACCTCCCTCAC
ATATCTTATTCATTAAATTGCATTCTCCCTTTCCCCACCTCCTTCCCACT
TCCCTCCTCCCCTTTTTTTATTTCTCCCTCCTCTCGN
NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACTGTCAGCTGCAC
AGCCATGTGTGTCCCAGAACCCAGGGCTCTGGACTTTGGTCATGGAGAAA
GCTATAAAATCAGCTCCCATCCCTCAACTACTGTTGTAACATCCAATCTG
TGTCTATACTTACTCTGCTCTTGCTACAGTCAGTGCCTGTCCTTTCATTT
TTCCAGACCACTAAAAGCTCTATCTGAATTATCGCTAAGAACCTGCCTTT
AACAAGACTACCAAGTAGAGGGAATTCTTGGGGTGTGGGAGGGAGAGGAA
GATATCTTTCTTTTTTTCTTTTTTTCTCCCCTTTCTCTTCCTTTTGTCCC
TTCCTCTCTTCCCCTTTCCTTTTCCCTTTCCTCTTTTTTCTTTTTCTTGC
TCTTTTCCCCTTTCTCTCTTGTCCCTTTCCCTCTTTCTCTCTCCTCTTTT
CCTTTTCCCCTTTCTCCCATTCCTATATCCCACTCCTTTCTCATTATCCC
CACAATCCCTTATTTCTAAACATCTTTCTTTCTTCCATTACTTTCTCTTT
CTATCTATATTTTACCCTTATCCCTTCCTATTTTCCCTACTTTTTCTCCC
TCTCTTTTATCCTATCTCCAATCTCCGCTTATTATCCATCCTTACTCTTA
GTTCCTCTTTACTTTCTTTCTCGCCCCTCTATATACTCCTTCTCCTATTA
TTATTTTTATCTTACCTTTTATTTATATACCCTTTGTTTACGCCCTTCAT
TTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_k02.g1 MSMg01no350_k02.g1 CHROMAT_FILE:
MSMg01no350_k02.g1 PHD_FILE: MSMg01no350_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:37 2005
         (271 letters)



>mm_chr7_133251227_133251897
          Length = 671

 Score =  511 bits (264), Expect = e-149
 Identities = 267/268 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactgtcagctgcacagccatgtgtgtcccagaacccagggctctggactttggtcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactgtcagctgcacagccatgtgtgtcccagaacccagggctctggactttggtcatg 260

                                                                       
Query: 61  gagaaagctataaaatcagctcccatccctcaactactgttgtaacatccaatctgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaagctataaaatcagctcccatccctcaactactgttgtaacatccaatctgtgtc 320

                                                                       
Query: 121 tatacttactctgctcttgctacagtcagtgcctgtcctttcatttttccagaccactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatacttactctgctcttgctacagtcagtgcctgtcctttcatttttccagaccactaa 380

                                                                       
Query: 181 aagctctatctgaattatcgctaagaacctgcctttaacaagactaccaagtagagggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctctatctgaattatcgctaagaacctgcctttaacaagactaccaagtagagggaa 440

                                       
Query: 241 ttcttggggtgtgggagggagaggaaga 268
           ||||||||| ||||||||||||||||||
Sbjct: 441 ttcttggggggtgggagggagaggaaga 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)