Query= MSMg01no350_m19.b1 MSMg01no350_m19.b1 CHROMAT_FILE:
MSMg01no350_m19.b1 PHD_FILE: MSMg01no350_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:51 2005
(501 letters)
>mm_chr7_91916032_91916933
Length = 902
Score = 820 bits (424), Expect = 0.0
Identities = 480/499 (96%), Gaps = 1/499 (0%)
Strand = Plus / Minus
Query: 1 ataaaacagaggaaagatagaatggggtttaatagctgaatctgggcaaaggagatcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 699 ataaaacagaggaaagatagaatggggtttaatagctgaatctgggcaaagaagatcctg 640
Query: 61 ttttctaaaccttggagaaaatgaactctactatctataatctaaggtttaagtgaaggg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 639 ttttctaaaccttggagaaaatgaactctattatctataatctaaggtttaagtgaaggg 580
Query: 121 tgagctataggagatacctttatcagacacaaactgctaatgagggcttcactctggagt 180
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 579 tgagctataggagatacctttgtcagacacagactgctaatgagggcttcactctggagt 520
Query: 181 atcattttctgaggtatatagaaggccaagaaatgagttggggagggtagaaaactgtaa 240
||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 519 atcattttctgagctgtatagaaggccaagaaatgagttggggagggtagaaaactataa 460
Query: 241 gcatccaagattctgagaatacaacaaacatagacctcagtagactgacagaccttggtc 300
|||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 459 gcatccaagacactgggaatacaacaaacatagacctcagtagagtgatagaccttggtc 400
Query: 301 cctgggtggtctacactaaccacaataacaatacagattaactcttgcttgatgcataaa 360
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 399 cctgcgtggtctacactaaccacaataacaaaacagattaactcttgcttgatgcataaa 340
Query: 361 cctgt-aaaaaaaaaaagttcatcaaagttttttaaaattagaagaaatgtatatcgcac 419
||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 339 cctgttaaaaaaaaaaagttcatcgaagtttcttaaaattagaagaaatgtatatcgcaa 280
Query: 420 tagttctcatgggagcaggtccttttggtcagtagtattgcttanggatgaaggcatttc 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 279 tagttctcatgggagcaggtccttttggtcagtagtattgcttaaggatgaaggcatttc 220
Query: 480 cagatctgtcctgtgactt 498
|||||||||||||||||||
Sbjct: 219 cagatctgtcctgtgactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space: 437972
Effective search space used: 437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_m19.g1 MSMg01no350_m19.g1 CHROMAT_FILE:
MSMg01no350_m19.g1 PHD_FILE: MSMg01no350_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:51 2005
(482 letters)
>mm_chr7_91894149_91895030
Length = 882
Score = 932 bits (482), Expect = 0.0
Identities = 482/482 (100%)
Strand = Plus / Plus
Query: 1 tgtaccagtgaagcacaccagcatgggaagatcagactagctctaccctgaaatccaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaccagtgaagcacaccagcatgggaagatcagactagctctaccctgaaatccaggc 260
Query: 61 aggccatcaggacagaggagcagacacaaagggatccacgcctctgtaacccagggacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggccatcaggacagaggagcagacacaaagggatccacgcctctgtaacccagggacca 320
Query: 121 acaaccaaggagccttattacagaggtcctgttttcagtggttccttgcctgtctcttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaccaaggagccttattacagaggtcctgttttcagtggttccttgcctgtctcttgt 380
Query: 181 cttggagcatagtatagagaaaagcctgcatactgaagccggagaaccattctcatacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggagcatagtatagagaaaagcctgcatactgaagccggagaaccattctcatacca 440
Query: 241 aaggagtattgggaaggaggagcactgtggcttatgtacccaaaagacaaatggtcactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggagtattgggaaggaggagcactgtggcttatgtacccaaaagacaaatggtcactg 500
Query: 301 agatagaacttcctgcttcctgttacatgttcctgcattagctcacctgtcagcatgttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatagaacttcctgcttcctgttacatgttcctgcattagctcacctgtcagcatgttc 560
Query: 361 gagggatatttgttttcctttctttgtttttattacatcttcttactgaataggaggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagggatatttgttttcctttctttgtttttattacatcttcttactgaataggaggagg 620
Query: 421 tttcccaagattgctagctagtccaagcacttagttataaagagttaggtgtggagaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcccaagattgctagctagtccaagcacttagttataaagagttaggtgtggagaggg 680
Query: 481 ag 482
||
Sbjct: 681 ag 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
