BAC Information

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BAC

Clone NameMSMg01-350N15
Chromosome7 (Build37)
Map Location 151,565,993 - 151,738,019
singlet/doubletdoublet
Overlap geneShank2, Cttn, Ppfia1
Upstream geneKcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneFadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350N15.T7 (MSMg01no350_n15.b1)MSMg01-350N15.TJ (MSMg01no350_n15.g1)
ACCAG462365AG462366
length789765
length of high quality
(start - end)		188 (130 - 317)481 (80 - 560)
definitionCHROMAT_FILE: MSMg01no350_n15.b1 PHD_FILE: MSMg01no350_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:55 2005CHROMAT_FILE: MSMg01no350_n15.g1 PHD_FILE: MSMg01no350_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,565,993 - 151,566,176)(151,737,539 - 151,738,019)
sequence
CCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGCCGCG
GAATTCTGCATCTTTCAAAGAATAATGATTGGGGGGGGAGTGTCTGTGAG
AAAGATGGTAAATCTAATGACTTAAAACCATGCATCCAGACTGGCCTGCT
GGAATCCGCTCAGACAGCAGGGAAGGCATCTTTAAGGAGAAGACCTGGTG
TGCAGAAACAGATGGCCCGCACTCAACTCTGGATGCCACTAAATGGACTA
TTCAGTCCCAGGGAGCCAGATGCTGAGCACTTCAGAGGAGTATGTGGAGA
GGGAACTGCCAAGAGGATCGTANATTTAAGCTTTGCAGGACCAGGTCCCC
GAGCAGAAAGCCTGGTGCCTAGAACCTGAGGGATGGTGGGGAGTTGGAGC
AGTATCTCCCGCGCCCCCCCCTATAACATTGCGTTGTATTCTGCATGCAC
TGTTCCTGTTAACTCTCTTTGAACAATCGCTCCACACCTAATATATCCCT
TCACATTACATTCCATCTATCCTCTTCCACCTCCTTCTTTTTGTCTTGTT
TCTACTTAGTTCCCCTCTACTTCCTCTCCTTCTCAACCTCTCTTTCCTAC
CCCTTTTCTTCCCCTCCCATCTTGATTCCACCTCTCCCCACTTCCCCCCC
TCTCTTATTCCTTTCTCTCTTTATTTCTCTCCTACTTTTCCTCCTTTCCC
TCTCACTTTTTCATATCCCCTCCCCCCTTCTTCTTCCTTCTCCCCCCCGT
CTTCTCTTATTTCCTTTCTCTTTCTCCTTCATCTTCTTT

NTTCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTTAGGGGAAAAAATGGGG
ATCCACCAAAGCCATGTGACCACACCACTCCACTGTCATACCTCTTTGGG
AAACTGCCTAGATTTAGGAAAGCACTTAAATGTTTTTGACAGGGGGCTAT
GAAGCAGTTGAGCTGTGTTGAGTGTCCCATTCTGTCTTAAACTTGTCCTT
GTCTGCTGTGGATCTGTGAGGAGTGGATCTCAGGGTTTTTTTATCTTATC
CCTGGTTTATGTCTTGTGGACTTCCTATTTCCTAGGGAAATCTTGTGGAT
AAATAGAACTCATTTCATGGGAAAAATTTATACAGGCTTTCTCCAGAACA
TCTGTGAGCTGTAACTAAACTTTGTTTCAGGGGAGAAAGGATTGAAAATT
GAATCCTGAGGCTCCTCTTCCCAGGCAGATGAGACTTTCAGAGCTTGAAA
TACCTACTGTGTCCTTAGTATCACATTTAGATTGGTATGCTAGAGCCTCC
TCTTTTGGAGTTAAGTGGTATAGGAAGGACAAGGCTGTATTGTCCTGCAT
TCCTACGGTGTTAGGCCTGCATGTGTCACCCGTGTTGTTATAACTCCCCG
CCCGCTGTCCCTTTTCCCTTCACTACGATGCATTATCTTCTTGTTGTTTT
ATATATTCCCCACCCCCCCTCTTTGTTGTTCCTCGTCTCATTCCTTCCCA
TCCTTCCCTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_n15.b1 MSMg01no350_n15.b1 CHROMAT_FILE:
MSMg01no350_n15.b1 PHD_FILE: MSMg01no350_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:55 2005
         (188 letters)



>mm_chr7_151565793_151566380
          Length = 588

 Score =  333 bits (172), Expect = 5e-96
 Identities = 181/184 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatccagactggcctgctggaatccgctcagacagcagggaaggcatctttaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcatccagactggcctgctggaatccgctcagacagcagggaaggcatctttaaggag 260

                                                                       
Query: 61  aagacctggtgtgcagaaacagatggcccgcactcaactctggatgccactaaatggact 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aagacctggtgtgcagaaacagatggcccgcactcgactctggatgccactaaatggact 320

                                                                       
Query: 121 attcagtcccagggagccagatgctgagcacttcagaggagtatgtggagagggaactgc 180
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagtcccagggagccagatgctgagcacttcagaggagtatgtggagagggaactgc 380

               
Query: 181 caag 184
           ||||
Sbjct: 381 caag 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no350_n15.g1 MSMg01no350_n15.g1 CHROMAT_FILE:
MSMg01no350_n15.g1 PHD_FILE: MSMg01no350_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:55 2005
         (481 letters)



>mm_chr7_151737339_151738219
          Length = 881

 Score =  922 bits (477), Expect = 0.0
 Identities = 480/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttaggggaaaaaatggggatccaccaaagccatgtgaccacaccactccactgtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatttaggggaaaaaatggggatccaccaaagccatgtgaccacaccactccactgtcat 622

                                                                       
Query: 61  acctctttgggaaactgcctagatttaggaaagcacttaaatgtttttgacagggggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctctttgggaaactgcctagatttaggaaagcacttaaatgtttttgacagggggcta 562

                                                                       
Query: 121 tgaagcagttgagctgtgttgagtgtcccattctgtcttaaacttgtccttgtctgctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagcagttgagctgtgttgagtgtcccattctgtcttaaacttgtccttgtctgctgt 502

                                                                       
Query: 181 ggatctgtgaggagtggatctcagggtttttttatcttatccctggtttatgtcttgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatctgtgaggagtggatctcagggtttttttatcttatccctggtttatgtcttgtgg 442

                                                                       
Query: 241 acttcctatttcctagggaaatcttgtggataaatagaactcatttcatgggaaaaattt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttccaatttcctagggaaatcttgtggataaatagaactcatttcatgggaaaaattt 382

                                                                       
Query: 301 atacaggctttctccagaacatctgtgagctgtaactaaactttgtttcaggggagaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacaggctttctccagaacatctgtgagctgtaactaaactttgtttcaggggagaaag 322

                                                                       
Query: 361 gattgaaaattgaatcctgaggctcctcttcccaggcagatgagactttcagagcttgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgaaaattgaatcctgaggctcctcttcccaggcagatgagactttcagagcttgaa 262

                                                                       
Query: 421 atacctactgtgtccttagtatcacatttagattggtatgctagagcctcctcttttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacctactgtgtccttagtatcacatttagattggtatgctagagcctcctcttttgga 202

            
Query: 481 g 481
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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