BAC Information

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BAC

Clone NameMSMg01-351K11
Chromosome7 (Build37)
Map Location 64,339,705 - 64,340,263
singlet/doubletsinglet
Overlap geneGabrg3
Upstream geneHerc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351K11.T7 (MSMg01no351_k11.b1)MSMg01-351K11.TJ (MSMg01no351_k11.g1)
ACCAG462973AG462974
length7341,184
length of high quality
(start - end)		563 (54 - 616)---
definitionCHROMAT_FILE: MSMg01no351_k11.b1 PHD_FILE: MSMg01no351_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:57 2005CHROMAT_FILE: MSMg01no351_k11.g1 PHD_FILE: MSMg01no351_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCGGGGTCCTTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATGCATGTATCCATGTATTTTATATGTATATGTGTAC
CTACAAATGTATATTTGTGTATGTACATGCATTCATATGTATGTACATGC
ATGCATGTGTGTGTTTCTCAAAACTTTCAGAGGCTACCTTGTATTATGGT
AGAGATTTAAAGTTTGTGGAGGTTTTCTTTTTTTCAAACACATTTAGAAC
TTAACATATGAGGCAACAAGACAGATCTCTTTTCCCTAGTTCTGGGGTTT
TCTATATAGGGAGAAGTCACTGTCTGACTGGGGATACTCCCTCAGAGATG
TGACTTCCTTGGGGCCTGGAAGACCAAGCCAACAGAAAGTCAGGAGAGAA
CTAACTTGGCCTCTAGATGAGATGCTTTGAGCACTCGATTGTGCTTAACA
GAACAAGTACACATAAAGGCCACAAGACTAGGTTGGTGCTGTGCCCTTGT
AGACTCAACTAATTGAGGCTGGATAATAACATAACCTGGAGTTGGGTACA
TGATCAAGTGCGGCCTGGCACTCTAGCAAGGCTCCATTTTAAAATATAAA
ATAAAATAAAGGGAAAAAAGGCAATAAATGAGTCTTTTGTAAATGACATA
CTTTCCACCATGTCTGACTTCCCACTTAAAGGAATCCTCCTGTATTGTGT
CATTGAGAAGAATTCTTATTGAACCCAATTGCCG

GTGTTGTGTGAGAGTTCTTATCTGTTGAAAAAATACAAGATACAGATAAT
ATAATTATCTGAGAAAGGGGGGCTCGTGGCGTTGGGAGTGTGTGCCTGAG
GTTATCGGAGGGGGAAGGAGAGAGCTGGAGAGAGAATCAATGTTCTAATA
ATTACTATAATCTGTATGTTGGTTCGATCAATTTGTTTGGGAGACTTATG
ATGATGAACATGTCATTTTATCTCTCCAGTAGCGCCTGTCGGTGGGGCTG
GGCATCCTAGCACGCATTAAAGCATCACTTGACGTGCTCAGTGATCAGTA
GTTTATATACAATAAAAAAAGAACTTATATAATATAGTTGTTATGTTCGT
ATATGTGTTGATCGATAGTTTTCTATCTTATTATTCCTCCTTTACCTTTA
GGTTTCTTCTGGTCGTCCATGTAGGAGGCTATCTGAGGTGGATGTTATTG
CTGAAGCTTATATATAATTGTTTGTGCGTGTTCAGGTTGGTGCATTGGGG
GTGTGTGCAAGCGTCTAGTCTGGATAAGTACAAGATAGAACTGAGTAGAT
TTCATATATCTATAACGAGACATCATACCAAGATACTTAAGTATATAATG
TTATGTAGATTGTATAATAAATCATGTAATACTATATACAAATGAGTATA
AGAAAGAAATGAAAATTAGAGTTTAGAGAAGATGAGTGGAGAGAGAAAAT
GGAATATAAGTATTAACAAAATGAATATATTAACACATTGATGAGCGATC
ACTATGTTGANAGAAATGAGATTATAAGTGGCCTGTCGTAGGAGGATTAA
TAATTATGAAGGAAGCGTATATATCAATGATATAACGAGTATGCAATCTT
ACTAATGTATCGAGGGCTGGACGTTCGTCTTGTATCGGGCCACTCGTGTG
CCATCGCANTCTATATGTAATGGGCGGAGTCTAACTATATGCACGTATAG
ACTATGTCACCTATATCTCTATATACGCGTATCTATGACGTCTGTTATTT
TAGATAATGACACTATGACGAGACTCATATAGATGTATGATGACATAATC
CTATACATATTGTAATAATATGATGACGTCACGAGATAAGANTATGATCG
TATCTGATAGTANCGATGGTGACCTCAGCGCNACCTAGACGTTATATGAT
GGACTCCGAGTGTGATAGAGTACGTCTCTGTNGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_k11.b1 MSMg01no351_k11.b1 CHROMAT_FILE:
MSMg01no351_k11.b1 PHD_FILE: MSMg01no351_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:57 2005
         (563 letters)



>mm_chr7_64339425_64340387
          Length = 963

 Score = 1050 bits (543), Expect = 0.0
 Identities = 555/559 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgcatgtatccatgtattttatatgtatatgtgtacctacaaatgtatatttg 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gaattcatgcatgtatatatgtattttatatgtatatgtgtacctacaaatgtatatttg 780

                                                                       
Query: 65  tgtatgtacatgcattcatatgtatgtacatgcatgcatgtgtgtgtttctcaaaacttt 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tgtgtgtacatgcattcatatgtatgtacatgcatgcatgtgtgtgtttctcaaaacttt 720

                                                                       
Query: 125 cagaggctaccttgtattatggtagagatttaaagtttgtggaggttttctttttttcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cagaggctaccttgtattatggtagagatttaaagtttgtggaggttttctttttttcaa 660

                                                                       
Query: 185 acacatttagaacttaacatatgaggcaacaagacagatctcttttccctagttctgggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 acacatttagaacttaacatatgaggcaacaagacagatctcttttccctagttctgggg 600

                                                                       
Query: 245 ttttctatatagggagaagtcactgtctgactggggatactccctcagagatgtgacttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttttctatatagggagaagtcactgtctgactggggatactccctcagagatgtgacttc 540

                                                                       
Query: 305 cttggggcctggaagaccaagccaacagaaagtcaggagagaactaacttggcctctaga 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttggggactggaagaccaagccaacagaaagtcaggagagaactaacttggcctctaga 480

                                                                       
Query: 365 tgagatgctttgagcactcgattgtgcttaacagaacaagtacacataaaggccacaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgagatgctttgagcactcgattgtgcttaacagaacaagtacacataaaggccacaaga 420

                                                                       
Query: 425 ctaggttggtgctgtgcccttgtagactcaactaattgaggctggataataacataacct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctaggttggtgctgtgcccttgtagactcaactaattgaggctggataataacataacct 360

                                                                       
Query: 485 ggagttgggtacatgatcaagtgcggcctggcactctagcaaggctccattttaaaatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggagttgggtacatgatcaagtgcggcctggcactctagcaaggctccattttaaaatat 300

                              
Query: 545 aaaataaaataaagggaaa 563
           |||||||||||||||||||
Sbjct: 299 aaaataaaataaagggaaa 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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