BAC Information

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BAC

Clone NameMSMg01-352A24
Chromosome7 (Build37)
Map Location 29,551,543 - 29,679,745
singlet/doubletdoublet
Overlap geneNfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4
Upstream geneLOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918
Downstream geneEif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352A24.T7 (MSMg01no352_a24.b1)MSMg01-352A24.TJ (MSMg01no352_a24.g1)
ACCAG463284AG463285
length793776
length of high quality
(start - end)		391 (54 - 444)454 (80 - 533)
definitionCHROMAT_FILE: MSMg01no352_a24.b1 PHD_FILE: MSMg01no352_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:28 2005CHROMAT_FILE: MSMg01no352_a24.g1 PHD_FILE: MSMg01no352_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(29,551,543 - 29,551,920)(29,679,292 - 29,679,745)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGACCGCG
GAAATCCCCAACATTTCCCCTCATGTACCCAATCAAAATGTTTTAAATAG
CTACACCCCGCCCCTGTACTGCACCACAACCAATCAGAAAAATGAGGTGG
ACATTCGCTCGCTGAGTTTCCCCACATTTTCCAGACGCCCTTTATCAATA
TGGCCGCCGGCGCCAGGCTTTTTGGGATTTGTAGTTTGATAACATGAGAG
GCACATTGTACGAAAGCGGTTATGGGGATCGCATTGCCTGCCGGGAGTTG
TAGTTCTCTATCCTATCTCGGCCTCTTCTTGTTTCCGCTGCCGTCACGGG
ACAGAGCAGTCGGTGACAGTCCCGAGGGCCCCCACCCCGTTCCCATGGCC
GAGCCGGACCGTGAGTTAGGGGCCCTGCTGGGAGGGTGGGAGGGTCNNNN
TNNTTTTTTTTTNTTTTTTTCCTTTTTTTTTTTTTTCCCTCNTTCTTTCT
CCCCCTTTCTTTTCTCCTTTTTCCCTCTTCCCTTCCCTCTTTTCTCTTCT
TTTTTTTCTCTCTCTCCTCTCTTCTTTCCCCCCTTTTCTTCCCTTCTCCT
TTTTTCCCTCTCTCTTCNCTCCTCCTTTCCTCCTTTTTCCCCTCCCCCCT
CCCTCCTTTCTCCCTCCTCCCTTTTTTTCCTCTTCCTTTCCCCCCCCGTC
TTTTTTTCCCCCCCTCTTCCCCCGCCCCCCTTTTTTTTCTCCCTCCTCCC
CTCCCTTCCTTTTTTTTTCTCCTTCTCCTTTCCCCNTCTCTTT

NTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAACTGAATCTGTAAG
CAGCTCCACTAAGTACTATGTCCTCTCCCTTTCCCCCTCCCCACAGGGTG
ATGCTGAGTTCAACCGGATCATGAGTGTGGTTGATCCCAACCATAGTGGC
CTCGTGACCTTCCAAGCCTTCATTGACTTCATGTCAAGGGAGACCACAGA
CACAGACACAGCTGATCAGGTCATCGCCTCCTTCAAGGTCCTGGCAGGAG
ACAAGGTAAGCACGACCCACAGAAGCATTGGCCGCCGGTAGCCAAAACTT
GAGCCAGCACTGGGTACTAGGTCAAGTGGGTAAGACACAGTGGCTCAGAG
TCCTGTTTATGCCCCTAGAACTTCATCACTGCTGAGGAACTGCGGAGAGA
GCTGCCCCCCGACCAGGCCGAGTACTGCATCGCCCGCATGGTACCCTACC
AGGGGCCTGATGCTGCTCCTGGCGCCCTTGACTACAAGTTCTTCTTCACA
GCCCCTCTATGTGGAGAGCGACCTGTGAGGCCTTTGCGTCCCCTGAAAAG
AAATTTCCCTGGCCCTCTCCGTAGGTCCTGTAAAAGTTCTGTTCCCCCCC
TTTACTCTGGATTTTATTTTTTATATCTTCCCCCTGGCCTATTCTACCAG
GCCCACTTTTCTCTCCCTCTTTATTATCCCTTTTTCTCCTCTCTACTTTT
TTTCCCCCTTCGTTTCTCTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_a24.b1 MSMg01no352_a24.b1 CHROMAT_FILE:
MSMg01no352_a24.b1 PHD_FILE: MSMg01no352_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:28 2005
         (391 letters)



>mm_chr7_29551330_29552120
          Length = 791

 Score =  708 bits (366), Expect = 0.0
 Identities = 375/378 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  cccctcatgtacccaatcaaaatgttttaaatagctacaccccgcccctgtactgcacca 73
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cccctcatatacccaatcaaaatgttttaaatagctacaccccgcccctgtactgcacca 273

                                                                       
Query: 74  caaccaatcagaaaaatgaggtggacattcgctcgctgagtttccccacattttccagac 133
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagccaatcagaaaaatgaggtggacattcgctcgctgagtttccccacattttccagac 333

                                                                       
Query: 134 gccctttatcaatatggccgccggcgccaggctttttgggatttgtagtttgataacatg 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gccctttatcaatatggccgccggcgccaggctttttgggatttgtagtttgataacatg 393

                                                                       
Query: 194 agaggcacattgtacgaaagcggttatggggatcgcattgcctgccgggagttgtagttc 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agaggcacattgtacgaaagcggttatggggatcgcattgcctgccgggagttgtagttc 453

                                                                       
Query: 254 tctatcctatctcggcctcttcttgtttccgctgccgtcacgggacagagcagtcggtga 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctatcctatctcggcctcttcttgtttccgctgccgtcacgggacagagcagtcggtga 513

                                                                       
Query: 314 cagtcccgagggcccccaccccgttcccatggccgagccggaccgtgagttaggggccct 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cagtcccgagggcccccaccccgttcccatggccgagccggaccgtgagttaggggccct 573

                             
Query: 374 gctgggagggtgggaggg 391
           | ||||||||||||||||
Sbjct: 574 gttgggagggtgggaggg 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_a24.g1 MSMg01no352_a24.g1 CHROMAT_FILE:
MSMg01no352_a24.g1 PHD_FILE: MSMg01no352_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:28 2005
         (454 letters)



>mm_chr7_29679092_29679945
          Length = 854

 Score =  862 bits (446), Expect = 0.0
 Identities = 452/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccaaaactgaatctgtaagcagctccactaagtactatgtcctctccctttccccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttccaaaactgaatctgtaagcagctccactaagtactatgtcctctccctttccccctc 595

                                                                       
Query: 61  cccacagggtgatgctgagttcaaccggatcatgagtgtggttgatcccaaccatagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cccacagggtgatgctgagttcaaccggatcatgagtgtggttgatcccaaccatagtgg 535

                                                                       
Query: 121 cctcgtgaccttccaagccttcattgacttcatgtcaagggagaccacagacacagacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cctcgtgaccttccaagccttcattgacttcatgtcaagggagaccacagacacagacac 475

                                                                       
Query: 181 agctgatcaggtcatcgcctccttcaaggtcctggcaggagacaaggtaagcacgaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agctgatcaggtcatcgcctccttcaaggtcctggcaggagacaaggtaagcacgaccca 415

                                                                       
Query: 241 cagaagcattggccgccggtagccaaaacttgagccagcactgggtactaggtcaagtgg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cagaagcattggcggccggtagccaaaacttgagccagcactgggtactaggtcaagtgg 355

                                                                       
Query: 301 gtaagacacagtggctcagagtcctgtttatgcccctagaacttcatcactgctgaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtaagacacagtggctcagagtcctgtttatgcccctagaacttcatcactgctgaggaa 295

                                                                       
Query: 361 ctgcggagagagctgccccccgaccaggccgagtactgcatcgcccgcatggtaccctac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 294 ctgcggagagagctgccccccgaccaggccgagtactgcatcgcccgcatggcaccctac 235

                                             
Query: 421 caggggcctgatgctgctcctggcgcccttgact 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 caggggcctgatgctgctcctggcgcccttgact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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