BAC Information

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BAC

Clone NameMSMg01-352D19
Chromosome7 (Build37)
Map Location 134,899,752 - 134,900,258
singlet/doubletsinglet
Overlap geneFbxl19
Upstream geneMapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2
Downstream geneTmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352D19.T7 (MSMg01no352_d19.b1)MSMg01-352D19.TJ (MSMg01no352_d19.g1)
ACCAG463414AG463415
length785772
length of high quality
(start - end)		511 (46 - 556)415 (77 - 491)
definitionCHROMAT_FILE: MSMg01no352_d19.b1 PHD_FILE: MSMg01no352_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:42 2005CHROMAT_FILE: MSMg01no352_d19.g1 PHD_FILE: MSMg01no352_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGACTAGCCAGGCCTAAACATCCTCCTCCTGACTGCAGCCAAGC
CCACAATCTCCTCCTGTAAAACCTCCACTGCAGTTTCAAACCCCATCTTG
CAGAAGCCCCCTGGGGACAGAGCTGGGCCAGCCCTAACTAAGTGCTCTCG
GCAGATTCTGCTTCACCGTGGGCGGAGATCACAGCTAGTTCTCCCTCGGA
AGAGCTCTCTGGGATTCCGGACACTGCCACAGTCCTCCATTCTCCCACCA
GCCAGCCTTGACCATGTGCCAGTCCCTTCCTTACTTCCTTCTCTGCCCAC
GTCCTTGAAAACGGTAGTGTCTACTAGTACATCAACACCCCCCCCCAGAA
CCCCCCTCCCCGCCCTTTGCCTCCCAGTTCTAAATAATCAAAGCCACCAG
ACAGGAAAGCCTGCCACTGCCTGCTCTCCCACTTACCACCCTCCTCTGGC
TACACCCTCTTCTACCTCTTTCCACACCCTTTTCTTCATGAATGCTCATT
CACTCAATACTGTCTCCGTGGGCAAAGAATACCANGCGCCTTTCTCAGAA
AACAAGAGACCCAGCGGGGACTCAAAGGAACAAAACTTTTGCTGCTGAAG
GCCTTTGTCACCCTCTCCTAATCCATTCCGGATTTTTAAACGGTTGGGGG
TGGGAAAAGGAACCCCTCCTTTTGTTATATTAGTAAAAAATCCCTCCTCC
GTCTTGTATATGTTCACATTGGGACAACCTTGTTT

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCTCTGATCTTTAAGTCATT
GTTCCTTCTCATATTCTTTCTTTCTTCCTCCCTTGCTCCCTCTGTCTGTC
CATCCTTCTCACTTCCCTTCCCCCCCCACACACCCCCAACCCCTACTCCA
ACCCCACCTCTGCCAAGGGTCTTGCTATGTACCTTTGGTTAGCCTGGAAC
TTACTACATAACATAGATTGGCTGTAAGTTTATGATCCTTCTACCTCAGT
TTGCCTTCTGTGGTTTATGACCTCTACTAATATGCCTATCTTTGTACCTT
CCATGTTTATTTGGTCATTTGTATGCTATTTGAAGAAATGTCTATTCAGA
TTATTTACCATTTTAAATTACTTTTGCGGCCCACCACTTTTCTCTGGGTG
CTAGAGATCAAAACCAGGCTCTGTGTTTGCCAAATGCTGAGGTTTTTTTG
AAGTACACTATCACTGTCTTTATACCCCCACAAATAGGGGACAGATCCCA
ATACAGATGTTTGCGGAGCCCCCACGTGTTTGCTCCGATTTTTCTTTTTA
CCCCCTTATCAACACTCCTCCCCTTTATCCATAAAATATTTCCCTTTTCC
TCTTAATTCGCGTTTTTCTAAATCCCCCCTTTTCTTCAGTTATTTAATAT
CCCCTAATTTCTTTATCCCATACCATTTTCTCCCCCCTTTCACCCCCATA
TTTTCCCTCTATTTATCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_d19.b1 MSMg01no352_d19.b1 CHROMAT_FILE:
MSMg01no352_d19.b1 PHD_FILE: MSMg01no352_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:42 2005
         (511 letters)



>mm_chr7_134899548_134900458
          Length = 911

 Score =  942 bits (487), Expect = 0.0
 Identities = 502/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgactagccaggcctaaacatcctcctcctgactgcagccaagcccacaatct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 711 gaattcttgactaggcaggcctaaacatcctcctcctgactgcagccaagcccacaacct 652

                                                                       
Query: 65  cctcctgtaaaacctccactgcagtttcaaaccccatcttgcagaagccccctggggaca 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cctcctgtaaaacctccattgcagtttcaaaccccatcttgcagaagccccctggggaca 592

                                                                       
Query: 125 gagctgggccagccctaactaagtgctctcggcagattctgcttcaccgtgggcggagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gagctgggccagccctaactaagtgctctcggcagattctgcttcaccgtgggcggagat 532

                                                                       
Query: 185 cacagctagttctccctcggaagagctctctgggattccggacactgccacagtcctcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cacagctagttctccctcggaagagctctctgggattccggacactgccacagtcctcca 472

                                                                       
Query: 245 ttctcccaccagccagccttgaccatgtgccagtcccttccttacttccttctctgccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttctcccaccagccagccttgaccatgtgccagtcccttccttacttccttctctgccca 412

                                                                       
Query: 305 cgtccttgaaaacggtagtgtctactagtacatcaacacccccccccagaacccccctcc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 411 cgtccttgaaaacggtagtgtctactagtacatcaacacccccccccagaacccccctgc 352

                                                                       
Query: 365 ccgccctttgcctcccagttctaaataatcaaagccaccagacaggaaagcctgccactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccgccctttgcctcccagttctaaataatcaaagccaccagacaggaaagcctgccactg 292

                                                                       
Query: 425 cctgctctcccacttaccaccctcctctggctacaccctcttctacctctttccacaccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cctgctctcccacttaccaccctcctctggctacaccctcttctacctctttccacaccc 232

                                      
Query: 485 ttttcttcatgaatgctcattcactca 511
           ||||||||||| |||||||||||||||
Sbjct: 231 ttttcttcatgtatgctcattcactca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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