BAC Information

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BAC

Clone NameMSMg01-352F02
Chromosome7 (Build37)
Map Location 106,865,950 - 106,866,266
singlet/doubletsinglet
Overlap genenone
Upstream genePrkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1
Downstream geneOlfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352F02.T7 (MSMg01no352_f02.b1)MSMg01-352F02.TJ (MSMg01no352_f02.g1)
ACCAG463473AG463474
length777793
length of high quality
(start - end)
367 (51 - 417)317 (82 - 398)
definitionCHROMAT_FILE: MSMg01no352_f02.b1 PHD_FILE: MSMg01no352_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:49 2005CHROMAT_FILE: MSMg01no352_f02.g1 PHD_FILE: MSMg01no352_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTAGGTTACGCTGGCCTTTAACTCAGAGATCCACCTGCC
TCTGCCCCCCCCCCCCCCGAGGGCTGGGATCGAAGGTGTGTGTCAAGCTA
CTGCCACCACCACCCAGCTGTCTGTAACGTTCTTTTTATTTTATTTTTTT
AAAAGATTTATTTATTTTATATATGTGAGTACACTATAGCTGTCTTCAGA
CACACCAGTAGAGGGCATCAGATCCCATTACCGATGGTTGTGAGCCACCA
TGTGGTTGCTGGGAATTGAACTCAGGATCTTTGGAAGAGCAGTCAGTGCT
CTTAACCACTGAGGCATCTCTCTAGCTCCAACTGTAACATCCTGCTTGTT
TGTTTTTGGTTTTGTATTTCCCCACAGGATTTCTCTGTGTAGCCCTGACT
GTCCTGGAACTCACTCTGTACATCAGGCTGGCTTCAAACTCCTAAATCTT
CCTGCCTCTAACTTCCTAATGCTGGTATTAAAGGCGTGCACTTCCCCCTG
CCTCGCTTGTCTGTACTCTTCTTTTTCAACTTGCTTGCGCCTTTTTCCCT
TATCGCCTTACCACCCCTTTCTCTGCATCACCTCCCCACCTCAAGTTTTC
CCACGGGCTCCCTCCTCCTCCGCTTGGATTTCCCTCCTTTGTCTAGTGTC
CCCCTCCCTTTTTTTCCCTCGTCTCCCTTTCTTTCCTCCTCTCTCTTCAT
TATTCTTTCTCATGCCTATTGATTCCT
NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTGTAAAGTGCCTGTG
CCCTCAGCCTGGGAGGACCCCTGGGTGAAGGGTCAAGTGTGACAGCATAG
AGGGTCACTTGGTTCCCGGGGCTACACTTTCTTTCACTCACTTTCCTGTT
CTCTCTTGTCCACCCCTGCTCTCTCTTGGCTATGGTATGAGTAAGTTCAG
CTTCTGCCAGGGAGCCCTCCATGACTTCACCTTCTCCAGCTGCCAGTGAG
CTTTCTCCCTGGAGTAACCAGGCCCAGCTGTAAATGCTGCCATTTTAAGT
CTCAGAGAACTCTGGTCCTCAATCATGCTGTCCCGAGAGAAGCTGGCTTG
GTCATGAATTGGTAGTGGAATGGAGTGCTTAGTGCCCATCCTGGTATCCC
ATTCATCGTCACCTGTGTTTTGTGAGCCTTCTCATTATCCATTTCCCCGC
CTCGCTTCTCGTTATCCCTCCTACCCGGTTCTTTTTCCCTTTCTTTTTTT
TTCCCTCTTATTCTCTTTCTTGCCCCGCCCTTTTCTTTATCTTTCTTTTT
TTTTCCGCTCCCCCCCTTTTTTCCCCTTATTCCCCCTTTTCCCCTTTGTT
TTCCCCCCTTTCTCTTCCCTGTTCCATTCATTTTCTCCCCCTACCCCCCT
GTTTCCCGCTACTCTTTATCTCGTCGCCCCCTCCTTTTATCTTTTTTCCC
CCTATTCCTCTTTCCTTTCCCTTTTAGCCCTTACTCCATGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_f02.g1 MSMg01no352_f02.g1 CHROMAT_FILE:
MSMg01no352_f02.g1 PHD_FILE: MSMg01no352_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:49 2005
         (317 letters)



>mm_chr7_106865750_106866466
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgtaaagtgcctgtgccctcagcctgggaggacccctgggtgaagggtcaagtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 attctgtaaagtgcctgtgccctcagcctgggaggacccctgggtgaagggtcaagtgtg 458

                                                                       
Query: 61  acagcatagagggtcacttggttcccggggctacactttctttcactcactttcctgttc 120
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 457 acagcatagagggtcacttggtccccggggctacagtttctttcactcactttcctgttc 398

                                                                       
Query: 121 tctcttgtccacccctgctctctcttggctatggtatgagtaagttcagcttctgccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tctcttgtccacccctgctctctcttggctatggtatgagtaagttcagcttctgccagg 338

                                                                       
Query: 181 gagccctccatgacttcaccttctccagctgccagtgagctttctccctggagtaaccag 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 337 gagccctccatgacttcaccttctccagctgccagtgaactttctccctggagtaaccag 278

                                                                       
Query: 241 gcccagctgtaaatgctgccattttaagtctcagagaactctggtcctcaatcatgctgt 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 277 gcccagctgtaaatgctgccattttaagtcttagagaactctggtcctcaatcatgctgt 218

                            
Query: 301 cccgagagaagctggct 317
           ||| |||||||||||||
Sbjct: 217 cccaagagaagctggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)