BAC Information

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BAC

Clone NameMSMg01-352L10
Chromosome7 (Build37)
Map Location 29,340,967 - 29,548,226
singlet/doubletdoublet
Overlap genePak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib
Upstream gene2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik
Downstream geneSirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L10.T7 (MSMg01no352_l10.b1)MSMg01-352L10.TJ (MSMg01no352_l10.g1)
ACCAG463772AG463773
length790776
length of high quality
(start - end)		363 (52 - 414)381 (82 - 462)
definitionCHROMAT_FILE: MSMg01no352_l10.b1 PHD_FILE: MSMg01no352_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:21 2005CHROMAT_FILE: MSMg01no352_l10.g1 PHD_FILE: MSMg01no352_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,547,880 - 29,548,226)(29,340,967 - 29,341,347)
sequence
TTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGTTTAGGCTGGGGACATTCACAGCGAGGCCCTACTTC
AAAATGAGGGGAACCAATAGCAGGTAGCTCAGTGGCAGCCAGCGTCCCTG
CATGCAAGCTACCTTAGGTTCAGTCCTCATGACTGCAAAGACAGGGCAGC
AGCCACCACAGAGCCCTGCCGTTCATTTGCTCCTGCTTTCCTACTTGTTG
GAACAGTTGGTGACAGAGACCTAGTGAAGTTACCACACCTATGGATTCGT
CTGTTGCTTCTTCTCCTTGTTAGCTTTTGCTTTATGTAATTTGAAGGTCT
GTTCTTAGAGCTACACTGAGTGTGTGTGTGTGTGTGTCTGTGTATGTGTG
TGGTGAGAGCCATCGTATCCAGCTTGTCTGTGTGTATGTGTATGTCTATG
TGCGGCGCACAGATACACTTACTGCCTGTTTCTCCTTGATGCCTTTCTTT
TTCTTATTTTCCCCCACTTCCACCCATTTCTTCACTCTTCACCTTCCCCC
TACATTTTTTCCTCCTCCTCATACTATTTTCCCCCTCCTTCCCCCTATTT
ACCCTTTCCCCTTCCCCCCCTTATTTCTACCTCCCCTCCCCTTCATCAAT
ATTTCCCATCTGTTCTCACAAATCCCCTTCTTCTGTATTCCCCATTTTAT
CTTTATTCCCGCCCCCCTTTTATTTCTACATCCCTCTCTTCGATAACTCC
CATCTCCTATACGTCCCGCTTGTTCCCTATATCTTCCTCG

NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGCACTGTTATTCAAC
AATCTCTTTTCCCTCATTGCCTCACAGAAGTCACCCACCTTTCTTGTATG
GGAACCCCTTGCACACATCTTATCTGTCTCTGAACTCTGATGTGTCATTA
AGCCTCAGTCCCTGGGGTCAAACCCAGTAAATCCAATTAGCCACCGGGTG
GGGCTTCTCAAGTCCCTTGGTATAGCAAGGACTATATTTTCCAGCCCGTC
TTGCCCCTGGGCGTGGCCAAACACCTAGTCAATGAAGAGACGGTGCAATC
CCTGGCTCAAATCCTTAAAGGAGCCAGTCCTTTTTGTAGGAGGTTATACT
CCCAGGGTGGAGGGCAGAGGGAGGCTGGAGTCCCTGCTACTTGAAGAAAG
ACTCTCAATTGTGTGTTTATGACAGAAAGGTTTCTGAGGTCTCCATAATG
GAGCAGACATCATAATCCCTGTTGACATTACCATGTATGGGCCAGCCCAG
GCCCTGATTCCTCCTGGCGTGGACCCCCATAAATTTTTTTTTCTACTTTT
CCGGTTGCCCCCTTTTATCCACTCTTTCCCACTTTCGCCTTTCTTGCCCT
TCTTTACTTCCCTGTTTCTTTGTATTTTCCCTTCTCTCCCTTTTCCAACT
AACTTTAACATACTCCCCCCCCTTTTTTTTTTTTCCCTCTTTCTTATTTA
TTTCCGTTTTTTCTTTCTCTACATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l10.b1 MSMg01no352_l10.b1 CHROMAT_FILE:
MSMg01no352_l10.b1 PHD_FILE: MSMg01no352_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:21 2005
         (363 letters)



>mm_chr7_29547573_29548335
          Length = 763

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagtttaggctggggacattcacagcgaggccctacttcaaaatgaggggaacc 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattcaagtccaggctggggacattcacagcgaggccctacttcaaaatgaggggaacc 595

                                                                       
Query: 65  aatagcaggtagctcagtggcagccagcgtccctgcatgcaagctaccttaggttcagtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aatagcaggtagctcagtggcagccagcgtccctgcatgcaagctaccttaggttcagtc 535

                                                                       
Query: 125 ctcatgactgcaaagacagggcagcagccaccacagagccctgccgttcatttgctcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctcatgactgcaaagacagggcagcagccaccacagagccctgccgttcatttgctcctg 475

                                                                       
Query: 185 ctttcctacttgttggaacagttggtgacagagacctagtgaagttaccacacctatgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctttcctacttgttggaacagttggtgacagagacctagtgaagttaccacacctatgga 415

                                                                       
Query: 245 ttcgtctgttgcttcttctccttgttagcttttgctttatgtaatttgaaggtctgttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttcgtctgttgcttcttctccttgttagcttttgctttatgtaatttgaaggtctgttct 355

                                                          
Query: 305 tagagctacactgagtgtgtgtgtgtgtgtgtctgtgtatgtgtgtg 351
           |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 354 tagagctacactgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_l10.g1 MSMg01no352_l10.g1 CHROMAT_FILE:
MSMg01no352_l10.g1 PHD_FILE: MSMg01no352_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:21 2005
         (381 letters)



>mm_chr7_29340767_29341547
          Length = 781

 Score =  737 bits (381), Expect = 0.0
 Identities = 381/381 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagcactgttattcaacaatctcttttccctcattgcctcacagaagtcacccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagcactgttattcaacaatctcttttccctcattgcctcacagaagtcacccacctt 260

                                                                       
Query: 61  tcttgtatgggaaccccttgcacacatcttatctgtctctgaactctgatgtgtcattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgtatgggaaccccttgcacacatcttatctgtctctgaactctgatgtgtcattaa 320

                                                                       
Query: 121 gcctcagtccctggggtcaaacccagtaaatccaattagccaccgggtggggcttctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcagtccctggggtcaaacccagtaaatccaattagccaccgggtggggcttctcaa 380

                                                                       
Query: 181 gtcccttggtatagcaaggactatattttccagcccgtcttgcccctgggcgtggccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcccttggtatagcaaggactatattttccagcccgtcttgcccctgggcgtggccaaa 440

                                                                       
Query: 241 cacctagtcaatgaagagacggtgcaatccctggctcaaatccttaaaggagccagtcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacctagtcaatgaagagacggtgcaatccctggctcaaatccttaaaggagccagtcct 500

                                                                       
Query: 301 ttttgtaggaggttatactcccagggtggagggcagagggaggctggagtccctgctact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgtaggaggttatactcccagggtggagggcagagggaggctggagtccctgctact 560

                                
Query: 361 tgaagaaagactctcaattgt 381
           |||||||||||||||||||||
Sbjct: 561 tgaagaaagactctcaattgt 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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