BAC Information

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BAC

Clone NameMSMg01-353D16
Chromosome7 (Build37)
Map Location 52,029,822 - 52,160,571
singlet/doubletdoublet
Overlap geneVrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1
Upstream geneKlk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473
Downstream geneStk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353D16.T7 (MSMg01no353_d16.b1)MSMg01-353D16.TJ (MSMg01no353_d16.g1)
ACCAG464158AG464159
length755757
length of high quality
(start - end)		541 (54 - 594)403 (82 - 484)
definitionCHROMAT_FILE: MSMg01no353_d16.b1 PHD_FILE: MSMg01no353_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:02 2005CHROMAT_FILE: MSMg01no353_d16.g1 PHD_FILE: MSMg01no353_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,029,822 - 52,030,363)(52,160,165 - 52,160,571)
sequence
TTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATGCTTTCTTGCCTTCTAAGCAACATACAGAGAAGC
ACAAAGTGGCCTGCATGCTTTACTGCCTGAGGGAGAGCATTGATCCCTCA
GGAACTGGAAGGCACCTTTTGCCCTAGGAGCCATGGACTCTTAAGACATG
AGTATGAAAACCATGTTGCATGTCTCTCAAGGTAGCAAGACCAGGCCAAC
TCCATGGTTTCCTGCAGTGTAGCACATCTGTTCTTCTGCTGCCATGAACT
TAATGCTGTTTTGTGTTTTCCAATGGTTGAAAATTTTTTTAAGGGCTGGA
GAGATGGCCTGGCGGTTAAGAGCACTGGCTGCTCTTCATGAGGACCTGGG
TTCAGTTCCCAGCGTCCACATGGTAGCTAACAACTGTTGGTAAATCCAAG
ATCTCTCATACAGACACATTTGCAGGCAAAACACCAGTGCTCATAAAATA
AAGATAAATTATTTTAAGACAGACAGACAGACAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGAAAGAAATGTTTAAAGAACATCTAAT
TGCACGTGGGGCTTGCCTGCCACTCATGCCGGTCGGTCACCGTGATGTGA
TGCCCACTGCTTCCCTCTGCTCAGGGGCTCCTTCTGTGGTCTGTGGTCAG
ATCCCTTCCCTGCCTCGGCTGGAACCGCCAGGCCCTGGGTAAAAGGGCCC
TAAGA

NNNNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGTTCAGTGAGAGACCC
TGTCTCAAAAAATAAGGTAGGGAGTGATTAAGGAAGATGCCTGGCATCTT
CGGGCCTTCTTATCCTTGCACATGGGCGTGGAGTCCTATGTGCACACATG
TGCACGCAGAACATGGAGTGGAAGCTACTCATGGCTGTCTAGGAAGTAAT
CAAAGATAACTCCCCTGCTCAGTGCCCTCCCTTTTCCAGGTAGGTCCCAC
CTTCCACAGTCTTTAGGACCTTCCTAAACAGTGCCAATGGCGGGGGAGCA
AGCACTAGAAGTATGGTATGTGTGGGAGATCTCAGTCACACTGGAACACT
GAGTCAGGCTAGTCACCTCACAACTCCCCCAGGCCTCTGTCTCCCTGTGT
ACATTCGCAGAGGCCACAGGGACTCTCCTGTTTCTCCTGTCCTTGTCCAA
ACCCTGTCTTCTCTTGCTCCCCCCACAGGNCCTCCAGGCCCCAGCCTGTC
ATGATAACATGGCGAAAGGCGGCGGCTATATCCTTGGGAATTTGTTACCT
TGTTTGCCGTGCCCCCCCCCCTCTTTGAGTTACCTCCTTCTTTTGGCCTC
CCTAAAGACCCCCTTAACCCTTTTTCTCCTTTCCTTTCCCTTTTCCCTTT
TTTACCTTTCTTTCCCCGTTCTTTCTCCTTTTCTTTTCCTTCATTCCCCC
TTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_d16.b1 MSMg01no353_d16.b1 CHROMAT_FILE:
MSMg01no353_d16.b1 PHD_FILE: MSMg01no353_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:02 2005
         (541 letters)



>mm_chr7_52029616_52030558
          Length = 943

 Score =  847 bits (438), Expect = 0.0
 Identities = 516/544 (94%), Gaps = 11/544 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   attccatgctttcttgccttctaag-caacatacagagaagcacaaagtggcctgcatgc 65
           ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 207 attccatgcttccttgccttctaaggcaacatacagagaagcacaaagtggcctgcgtgc 266

                                                                       
Query: 66  tttactgcctgagggagagcattgatccctcaggaactggaaggcaccttttgccctagg 125
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 267 tttactgcctgagggagagcattgatccctcaggaactggaaagcaccttgtgccctagg 326

                                                                       
Query: 126 agccatggactcttaa-gacatgagtatgaaaaccatgttgcatgtctctcaaggtagca 184
           ||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 327 agccatggattcttaaagacatgagtatgaaaaccatgtcgtatgtctctcaaggtagca 386

                                                                       
Query: 185 agaccaggccaactccatggtttcctgcagtgtagcacatctgttcttctgctgccatga 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 387 agaccaggccaactccatggtttcctgcagtgtagcacacctgttcttctgctgccatga 446

                                                                       
Query: 245 acttaatgctgttttgtgttttccaatggttgaaaatttttttaagggctggagaga--t 302
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |
Sbjct: 447 acttaatgctgttttgtgttttccaatggttgaaaatttttt-aagggctggagagagat 505

                                                                       
Query: 303 ggcctggcggttaagagcactggctgctcttcatgaggacctgggttcagttcccagcgt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggcctggcggttaagagcactggctgctcttcatgaggacctgggttcagttcccagcgt 565

                                                                       
Query: 363 ccacatggtagctaacaactgttggtaaatccaagatctctcatacagacacatttgcag 422
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 566 ccacatggtagcttacaactgttggtaaatccaagatctctcatacagacacacttgcag 625

                                                                       
Query: 423 gcaaaacaccagtgctcataaaataaagataaattattttaagacagacagacagacag- 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 626 gcaaaacaccagtgctcataaaataaagataaattattttaagacagacagacagacaga 685

                                                                       
Query: 482 --ga-agga-aggaaggaaggaaggaaggaaggaaggaaggaagaaagaaatgtttaaag 537
             || || | || ||| ||| ||| ||| ||||||| ||| |||||||||||||||||||
Sbjct: 686 cagacag-acagaaagaaagaaagaaagaaaggaagaaagaaagaaagaaatgtttaaag 744

               
Query: 538 aaca 541
           ||||
Sbjct: 745 aaca 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 943
Length adjustment: 10
Effective length of query: 531
Effective length of database: 933
Effective search space:   495423
Effective search space used:   495423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_d16.g1 MSMg01no353_d16.g1 CHROMAT_FILE:
MSMg01no353_d16.g1 PHD_FILE: MSMg01no353_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:02 2005
         (403 letters)



>mm_chr7_52159887_52160693
          Length = 807

 Score =  729 bits (377), Expect = 0.0
 Identities = 398/407 (97%), Gaps = 4/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggttcagtgagagaccctgtctcaaaaaataaggtagggagtgattaaggaagatgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 tgggttcagtgagagaccctgtctcaaaaaataaggtagggagtgattgaggaagatgcc 626

                                                                       
Query: 61  tggcatcttcgggccttcttatccttgcacatgggcgtggagtcctatgtgcacacatgt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 tggcatcttcgggccttcttatccttgaacatgggcgtggagtcctatgtgcacacatgt 566

                                                                       
Query: 121 gcacgcagaacatggagtggaagctactcatggctgtctaggaagtaatcaaagataact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcacgcagaacatggagtggaagctactcatggctgtctaggaagtaatcaaagataact 506

                                                                       
Query: 181 cccctgctcagtgccctcccttttccaggtaggtcccaccttccacagtctttaggacct 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccctgcccagtgccctcccttttccaggtaggtcccaccttccacagtctttaggacct 446

                                                                       
Query: 241 tcctaaacagtgccaatggcgggggagcaagcactagaagtatg----gtatgtgtggga 296
           ||||||||||| |||||||| |||||||||||||||||||||||    ||||||||||||
Sbjct: 445 tcctaaacagtaccaatggcaggggagcaagcactagaagtatgtatggtatgtgtggga 386

                                                                       
Query: 297 gatctcagtcacactggaacactgagtcaggctagtcacctcacaactcccccaggcctc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatctcagtcacactggaacactgagtcaggctagtcacctcacaactcccccaggcctc 326

                                                          
Query: 357 tgtctccctgtgtacattcgcagaggccacagggactctcctgtttc 403
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtctccctgtgtacattcgcagaggccacagggactctcctgtttc 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 807
Length adjustment: 9
Effective length of query: 394
Effective length of database: 798
Effective search space:   314412
Effective search space used:   314412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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