Query= MSMg01no353_g20.b1 MSMg01no353_g20.b1 CHROMAT_FILE:
MSMg01no353_g20.b1 PHD_FILE: MSMg01no353_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:18 2005
(563 letters)
>mm_chr7_98723215_98724180
Length = 966
Score = 1040 bits (538), Expect = 0.0
Identities = 556/562 (98%), Gaps = 3/562 (0%)
Strand = Plus / Plus
Query: 5 gaattctttcttccttca-tcacatattcatcattcaatacatagttccttcatactaag 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcttccttcaatcacatattcatcattcaatacatagttccttcatactaag 264
Query: 64 tttgagagctaggctattgggcaatgcaaaaatacatcatggatattagaacctaatcat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgagagctaggctattgggcaatgcaaaaatacatcatggatattagaacctaatcat 324
Query: 124 aattatcagtaataaaccaaacagaacatttt-aactgtatatatactatgcatatataa 182
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 325 aattatcagtaataaaccaaacagaacatttttaactgtatatagactatgcatatataa 384
Query: 183 aatttatcttctctgtatgtatactttaattatgtattatatatttattctttgtgtatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttatcttctctgtatgtatactttaattatgtattatatatttattctttgtgtatt 444
Query: 243 cacacactgtcaggtcacatgtctctggtaaaaaaa-gtactctaacatatacctgccag 301
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 catacactgtcaggtcacatgtctctggtaaaaaaaagtactctaacatatacctgccag 504
Query: 302 tatggagataatgcaccacttaaatgactttaatatatgttatcatgaatacttgagaag 361
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgtagataatgcaccacttaaatgactttaatatatgttatcatgaatacttgagaag 564
Query: 362 agcttattctgctttggcaataagaggtttcttcagaacgtgatagttggactctagaag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcttattctgctttggcaataagaggtttcttcagaacgtgatagttggactctagaag 624
Query: 422 ctgagagaagtggactacatcaggaaaggcagatggagattagtagaataggcagaagga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgagagaagtggactacatcaggaaaggcagatggagattagtagaataggcagaagga 684
Query: 482 actgtatgcatggagatgctgatacaagggcatgtctcattagaagttgaaaaaaaatat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actgtatgcatggagatgctgatacaagggcatgtctcattagaagttgaaaaaaaatat 744
Query: 542 actggcgtggacaagggctctc 563
||||||||||||||||||||||
Sbjct: 745 actggcgtggacaagggctctc 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 966
Length adjustment: 10
Effective length of query: 553
Effective length of database: 956
Effective search space: 528668
Effective search space used: 528668
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_g20.g1 MSMg01no353_g20.g1 CHROMAT_FILE:
MSMg01no353_g20.g1 PHD_FILE: MSMg01no353_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:18 2005
(493 letters)
>mm_chr7_98926177_98927069
Length = 893
Score = 930 bits (481), Expect = 0.0
Identities = 490/493 (99%)
Strand = Plus / Minus
Query: 1 tgtgagaagctttggagatgtggaatgatacaatcaaaagctaatttgtgttataagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tgtgagaagctttggagatgtggaatgatacaatcaaaagctaatttgtgttataagaaa 634
Query: 61 gggcgagacttggggtacaatacaatgtattacaggggggaattctgcaaagtgtcgtgt 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 633 gggcgagacttggggtacaatacaatgtattacaggggggaaatctgcaaagtgtcgtgt 574
Query: 121 cagtcacaagagacaaaatggtctgctttcggataactttaagtaatttaattaagtaat 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cagtcagaagagacaaaatggtctgctttcggataactttaagtaatttaattaagtaat 514
Query: 181 ggtttaggaacagtggttttttaaatacttagtagtgcctgataaattaaagagaattaa 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggtttaggaacagtggtttttttaatacttagtagtgcctgataaattaaagagaattaa 454
Query: 241 ttatttctatcacctgaaattattttggtatacagagtacttttgaaaatctaggctaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttatttctatcacctgaaattattttggtatacagagtacttttgaaaatctaggctaga 394
Query: 301 aataaagatgacaattcactcaatatattttaagatagttttggaaaatggtgcatatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aataaagatgacaattcactcaatatattttaagatagttttggaaaatggtgcatatat 334
Query: 361 tggtataataagcaatgacccacagtctattaaatatataggagaattcaaggttgattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tggtataataagcaatgacccacagtctattaaatatataggagaattcaaggttgattt 274
Query: 421 ctaaattatctctagtacatgtctatcacatttactcccctttgaattggtccctaatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctaaattatctctagtacatgtctatcacatttactcccctttgaattggtccctaatgg 214
Query: 481 catattatgtcat 493
|||||||||||||
Sbjct: 213 catattatgtcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
