Query= MSMg01no353_j05.b1 MSMg01no353_j05.b1 CHROMAT_FILE:
MSMg01no353_j05.b1 PHD_FILE: MSMg01no353_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:29 2005
(531 letters)
>mm_chr7_70221060_70221991
Length = 932
Score = 934 bits (483), Expect = 0.0
Identities = 516/527 (97%), Gaps = 1/527 (0%)
Strand = Plus / Minus
Query: 6 ggaattccacagatgttactttcatgaatctcttatggtggagaaaagtttttaatgatg 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggaattccacagatgtaactttcatgaatctcttatggtggagaaaagtttttaatgatg 499
Query: 66 taactgactttgagccacatctaccagacttaacatggcttgaaatttgtctttggtctg 125
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 taactgactttgagctacatctaccagacttaacatgacttgaaatttgtctttggtctg 439
Query: 126 tcatttggtgccccatctgaagtgaatggatgtttctttacatcttccagtgaaaatgca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcatttggtgccccatctgaagtgaatggatgtttctttacatcttccagtgaaaatgca 379
Query: 186 tataatctagttggtatctggacatgaaccaaaaatgtgttgaagaggagcagtggcaca 245
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 tgtaatctagttggtatctggacatgaaccaaaaatgtgttgaagaggagcagttgcaca 319
Query: 246 gtcattgtaaggagtgat-aaaaatgcaaccaaagctgagctagctcagagtagaacatc 304
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 318 gtcattgtaaggagtgataaaaaatgcaaccaaagctgagctagctcagagtggaacatc 259
Query: 305 aatggaaggtatctctcctcatgtgatgtgggtggtttgcctctttgttgtactgcatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aatggaaggtatctctcctcatgtgatgtgggtggtttgcctctttgttgtactgcatga 199
Query: 365 tctttgatggatatgcaatgaaggctgagccttctgagggcaaaggacatgttggatatt 424
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 198 tctttgatggatatgcaatgaaggctgagccttctgaaggcaaaggacatgtgggatatt 139
Query: 425 tggggaagattctagaggggccattttcctttatacggtatggtgtggtacatctcattg 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 138 tggggaagattctagaggggccattttcctttatatggtatggtgtggtacatctcattg 79
Query: 485 atgaatagaatcaaccccatgtatatagaaatttccttaaaatggtt 531
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 78 atgaatagaatcaaccccatttatatagaaatttccttaaaatggtt 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_j05.g1 MSMg01no353_j05.g1 CHROMAT_FILE:
MSMg01no353_j05.g1 PHD_FILE: MSMg01no353_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:29 2005
(494 letters)
>mm_chr7_70071639_70072532
Length = 894
Score = 882 bits (456), Expect = 0.0
Identities = 482/494 (97%), Gaps = 6/494 (1%)
Strand = Plus / Plus
Query: 1 tgctgagaagagaacatgtccctgctggaggactgtgccctttcatctggtaagtgtgca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgagaggagaacatgtccctgctggaggactgtgccctttcatctggtaagtgtgca 260
Query: 61 cagccttgtttccagcagacacttacctagaactgacaacaaagtggtctttggagatgt 120
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 cagccttgtttccagcagagacttacctagaactgacaacaaagtggtctttagagatgt 320
Query: 121 tagttctcattgctttcagagatgattaaaaggcccactgccactgcccaagaatccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttctcattgctttcagagatgattaaaaggcccactgccactgcccaagaatccaag 380
Query: 181 tttgcaggtggtgtttgtgaaactgtaatactgtgtttcatttttttatgtttattttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcaggtggtgtttgtgaaactgtaatactgtgtttcatttttttatgtttattttat 440
Query: 241 acatacatatttatttattcatatacttgactatatatatatgtgtgtgcattagttaca 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 acatacatatttatttattcatatacttgactatatatat------gtgcattagttaca 494
Query: 301 tatttataaatgcattttatcagtattccttacaaaatacataattacatttattttgta 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 495 tatttataaatgcattttatcagtattccttacaaaatacatagttacatttattttgta 554
Query: 361 tttctcatcatattaggccacatttctatgagtaaattgttaaattttacagatagatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tttctcatcatattaggccacatttctatgagtaaattgttaaattttacagatagatat 614
Query: 421 taataactttatacattcatctacatctgtaatatttatttacatatattttgcatggat 480
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 taataactttatacaatcatctacatctgtaatatttatttacacatattttgcatggat 674
Query: 481 atgtaaatatttat 494
||||||||||||||
Sbjct: 675 atgtaaatatttat 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
