BAC Information

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BAC

Clone NameMSMg01-353O13
Chromosome7 (Build37)
Map Location 127,485,980 - 127,606,467
singlet/doubletdoublet
Overlap geneAbca15, Abca16
Upstream geneGp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14
Downstream geneLOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353O13.T7 (MSMg01no353_o13.b1)MSMg01-353O13.TJ (MSMg01no353_o13.g1)
ACCAG464671AG464672
length776772
length of high quality
(start - end)		498 (49 - 546)474 (77 - 550)
definitionCHROMAT_FILE: MSMg01no353_o13.b1 PHD_FILE: MSMg01no353_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:55 2005CHROMAT_FILE: MSMg01no353_o13.g1 PHD_FILE: MSMg01no353_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,605,974 - 127,606,467)(127,485,980 - 127,486,453)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTATCTCTGTACCTCATTTTACAAATAGGGTTATTTGGTTC
TGTGGAGTCTACCTTCTTCAGTTCTTCGAATATTTTAGACATTAGCCCTT
TATCAGATGTAGGGTTGGTAAAGATCTTTTCCCAATCTGTGGGTTGATGT
TTTGTCCTATTGTGATTTTGAATGAGATCAATAGGACCCTCCTACCCTGC
TGAGAAAGAATTCTGACAGGTAAAAACAGTTTGTTTCCTCTGGAAGAAGA
GCCTTATGTGATGTTTTATGAGATCAGAGGTTGTAAGCCTACATCAGGTA
TGATGTGAATGTAGCCTTCTGATTTTAAAATCTCTATCTTCATTTGTGGC
ACCAGGAATCATTCCTAGGCAAGAGCTTGCTCTTGGTCAGCTGGTTAGAG
GACTTACTATACTCTAAACTGGCTTAATAAAAGTGTAGTGATTTGTAACT
GTCTCGCATGAATTATTTCAGTGTGACATATGAAACAGAAGTTTTACCGG
ATGTATCAGGGAGCAAAGGGTAGTCATTCCCGAGATCCAAGATAAAGGCA
GCCCTATTATGTTTTTTAACCCCTACCATACAGTTTTAATTACTTTGTAC
AATAGGTTCTTCCCGGATTGGTTACCAATTCTCACCAAGGTTTGCGTTCC
TTCCACCCCCCACTTCCTTTTGGCTTTCTATTCGCTAACTAATTCCAGTC
ATCCGCCCTTACTTTTCCCCTAATCG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCTCTCCATATTTTTGTTCT
CAGTGTAGGACAATGTCTGCTTATATAAGGCAGGGCAACCAGATAGGTTT
GAAAGTCCACATATTCAAATGCTGACCTCAACTGGAGGCACCCAAACATA
CCCAGAAATAATGTTTGCTCTGTGTACCCCACAGTACATTAACGATGGCA
TGGGAAACTAGTCACCAGCAAAGGACACACAGAGAGCAACAAAACGTAAT
AAATCACAGCATACACAAAAATGTTTCTCAGCATCACAAGTAAAGACAGA
CTTAGGTAATAGGCAGGTTTTGAAAGATTTTTAAATGACTGAACGATGGA
AATGGAAAATAATCAACGCACAGATATTCACTCTTTCATTCTTGATTTGT
TCACTCAGACATTCTTTACTTGGGTTACATACTTGGTGCTTAGAGTCATC
TCTAACAACAGAGACAAATAAAGCTTTCTTTCTCACCATTTAAGGATTCA
TATGCCAAGTTGGGGTTGTGTGTGCGCGCGTCCGCGTTTCCCTTTTTCCT
TCTCTTTCCTCTTCTCACTTTTACTTTCTCTCACTTCCCCCCTTTCCCCC
CCTTTTCTCTTTTTTCTCTCCCTACCCCCTCTATATAACCTTCCCATATA
TTTCCCTTCTTCCGCTCTTTTTTCCCTATCCCCTCTCTTCTTTCCCCTGC
TTTATTCTTCCTTTCTTCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_o13.b1 MSMg01no353_o13.b1 CHROMAT_FILE:
MSMg01no353_o13.b1 PHD_FILE: MSMg01no353_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:55 2005
         (498 letters)



>mm_chr7_127605610_127606507
          Length = 898

 Score =  878 bits (454), Expect = 0.0
 Identities = 484/494 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatctctgtacctcattttacaaatagggttatttggttctgtggagtctac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattctttatctctgtacctcattttacaaatagggttatttggttctgtggagtctac 799

                                                                       
Query: 65  cttcttcagttcttcgaatattttagacattagccctttatcagatgtagggttggtaaa 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 798 cttcttcagttcttcgaatattttagacattagccctttatcggatgtagggttggtaaa 739

                                                                       
Query: 125 gatcttttcccaatctgtgggttgatgttttgtcctattgtgattttgaatgagatcaat 184
           | ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 738 ggtcttttcccaatctgtgggatgatgttttgtcctattgtgatttttaataagatcaat 679

                                                                       
Query: 185 aggaccctcctaccctgctgagaaagaattctgacaggtaaaaacagtttgtttcctctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aggaccctcctaccctgctgagaaagaattctgacaggtaaaaacagtttgtttcctctg 619

                                                                       
Query: 245 gaagaagagccttatgtgatgttttatgagatcagaggttgtaagcctacatcaggtatg 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 618 gaagaacagccttatgtgatgttttatgagatcagaggttgtaagcctacatcaggtgtg 559

                                                                       
Query: 305 atgtgaatgtagccttctgattttaaaatctctatcttcatttgtggcaccaggaatcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atgtgaatgtagccttctgattttaaaatctctatcttcatttgtggcaccaggaatcat 499

                                                                       
Query: 365 tcctaggcaagagcttgctcttggtcagctggttagaggacttactatactctaaactgg 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tccaaggcaagagcttgctcttggtcagctggttagaggacttactatactctaaactgg 439

                                                                       
Query: 425 cttaataaaagtgtagtgatttgtaactgtctcgcatgaattatttcagtgtgacatatg 484
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 438 cttaaaaaaagtgtagtgatttgtaactgtctcgcatggattatttcagtgtgacatatg 379

                         
Query: 485 aaacagaagtttta 498
           ||||||||||||||
Sbjct: 378 aaacagaagtttta 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_o13.g1 MSMg01no353_o13.g1 CHROMAT_FILE:
MSMg01no353_o13.g1 PHD_FILE: MSMg01no353_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:55 2005
         (474 letters)



>mm_chr7_127485780_127486653
          Length = 874

 Score =  762 bits (394), Expect = 0.0
 Identities = 454/474 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttctctccatatttttgttctcagtgtaggacaatgtctgcttatataaggcagggc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tttttctctccatatttttgttctcagtgtaggacgatgtctgcttatataaggcagggc 260

                                                                       
Query: 61  aaccagataggtttgaaagtccacatattcaaatgctgacctcaactggaggcacccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccagataggtttgaaagtccacatattcaaatgctgacctcaactggaggcacccaaa 320

                                                                       
Query: 121 catacccagaaataatgtttgctctgtgtaccccacagtacattaacgatggcatgggaa 180
           ||||||||||||||||||||  || |||||||||||||||||||||| ||||||||||||
Sbjct: 321 catacccagaaataatgttttttccgtgtaccccacagtacattaacaatggcatgggaa 380

                                                                       
Query: 181 actagtcaccagcaaaggacacacagagagcaacaaaacgtaataaatcacagcatacac 240
           ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||
Sbjct: 381 actagtcaccagcaaaggacacacaaagagcaacaaaacatactaaatcacagcatacac 440

                                                                       
Query: 241 aaaaatgtttctcagcatcacaagtaaagacagacttaggtaataggcaggttttgaaag 300
           ||||| |  || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aaaaaagggtcacagcatcacaagtaaagacagacttaggtaataggtaggttttgaaag 500

                                                                       
Query: 301 atttttaaatgactgaacgatggaaatggaaaataatcaacgcacagatattcactcttt 360
           ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct: 501 atttttaaatgactgaaagatggaaatggaaaataatcaatggacagatattcactcttt 560

                                                                       
Query: 361 cattcttgatttgttcactcagacattctttacttgggttacatacttggtgcttagagt 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 catccttgatttgttcactcagacattctttacttgggttacatacttggtgcctagagt 620

                                                                 
Query: 421 catctctaacaacagagacaaataaagctttctttctcaccatttaaggattca 474
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 621 catctctaacaacagagacaaataaagcttgctttctcagcatttaaggattca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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