Query= MSMg01no354_d15.b1 MSMg01no354_d15.b1 CHROMAT_FILE:
MSMg01no354_d15.b1 PHD_FILE: MSMg01no354_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:19 2005
(565 letters)
>mm_chr7_93568818_93569782
Length = 965
Score = 1046 bits (541), Expect = 0.0
Identities = 556/561 (99%)
Strand = Plus / Minus
Query: 5 gaattcattactttcagaattgctgaacaaacaagattagttctgtgtaaaaccaagact 64
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 765 gaattcattacttttagaattgctgaacaaacaggattagttctgtgtaaaaccaagact 706
Query: 65 ggaagcagaatctgatatgtgttacaatattgaacctgtttcattttgaatctaaatttt 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 705 ggaagcagaatctgatatgtgttacaatattgaacctgtttcattttaaatctaaatttt 646
Query: 125 ggcaaactgatccaaagtttaggaaacagagttataatcttatgtaatgtgcaggggtgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggcaaactgatccaaagtttaggaaacagagttataatcttatgtaatgtgcaggggtgt 586
Query: 185 tctgaacttaaaactttttgtaaaagtattcacatgagtaaggggatatatcacattttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctgaacttaaaactttttgtaaaagtattcacatgagtaaggggatatatcacattttt 526
Query: 245 atcattaaaagtaatataaacttaatggataaaataataatatttattgaaatggtaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atcattaaaagtaatataaacttaatggataaaataataatatttattgaaatggtaatt 466
Query: 305 ttcactaagtatgttatggcatagttagactactaattaagtaattcattattaaggtac 364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttcactaagtatattatggcatagttagactactaattaagtaattcattattaaggtac 406
Query: 365 acagggcttgttgcttgatttttaattacattaattcacttgatttacaatttcaacctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acagggcttgttgcttgatttttaattacattaattcacttgatttacaatttcaacctc 346
Query: 425 ctgcttcaccttagacactctgttgggaatttgtaatctaaatgagtgtttgttgcatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 345 ctgcttcaccttagacactctgttgggaatttgtaatctaaatgagtgtttattgcatga 286
Query: 485 aacttgaatgctgacaacatataaattaaagatgatatatttgataaactcatctttagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aacttgaatgctgacaacatataaattaaagatgatatatttgataaactcatctttagc 226
Query: 545 agaaagattaaacttcatcat 565
|||||||||||||||||||||
Sbjct: 225 agaaagattaaacttcatcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_d15.g1 MSMg01no354_d15.g1 CHROMAT_FILE:
MSMg01no354_d15.g1 PHD_FILE: MSMg01no354_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:19 2005
(535 letters)
>mm_chr7_93392555_93393490
Length = 936
Score = 975 bits (504), Expect = 0.0
Identities = 526/536 (98%), Gaps = 7/536 (1%)
Strand = Plus / Plus
Query: 1 ctaagtatattttgagttgtttattttctttattaaggaacttctctagaggatggaata 60
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 207 ctaagtatattttgagttg-tta-----tttattaaggaacttctctagaggatggaata 260
Query: 61 tatctatcatgaaggaatctgctacacaacactacaggattctgtagtcccaaaaactta 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tatctatcatgaaggaatctgctacacaacgctacaggattctgtagtcccaaaaactta 320
Query: 121 taattaatacaccttttctcttttatctggtcaatgtacatttccaacagattgtgctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattaatacaccttttctcttttatctggtcaatgtacatttccaacagattgtgctta 380
Query: 181 acacagagaacctaaactgacttaggtgcaaagaataggaaactatagcatccttgatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacagagaacctaaactgacttaggtgcaaagaataggaaactatagcatccttgatga 440
Query: 241 aaattttatgtttaaactctgcttcacatcctaatagatcatcttcatttatgtctgatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattttatgtttaaactctgcttcacatcctaatagatcatcttcatttatgtctgatc 500
Query: 301 ttgaattgatatatcatttcctcagcatttcacatcactatgcatagtattttatgaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaattgatatatcatttcctcagcatttcacatcactatgcatagtattttatgaatt 560
Query: 361 taaatagtataatgatatgacccagttccccataattactcattctctaatattattaag 420
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatagtataatgatatgactcggttccccataattactcattctctaatattattaag 620
Query: 421 ggcattttt-gacaaatgaaaccacaattgagaattttaaggcactccaccattcttcat 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcattttttgacaaatgaaaccacaattgagaattttaaggcactccaccattcttcat 680
Query: 480 ttcatctgagaatatttttttcatttattctacagtttccagcatcctaccgaact 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcatctgagaatatttttttcatttattctacagtttccagcatcctaccgaact 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
