BAC Information

Click to search

BAC

Clone NameMSMg01-354K14
Chromosome7 (Build37)
Map Location 6,256,601 - 6,257,092
singlet/doubletsinglet
Overlap geneZfp667
Upstream geneNlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821
Downstream geneZfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354K14.T7 (MSMg01no354_k14.b1)MSMg01-354K14.TJ (MSMg01no354_k14.g1)
ACCAG465236AG465237
length781729
length of high quality
(start - end)
189 (81 - 269)492 (87 - 578)
definitionCHROMAT_FILE: MSMg01no354_k14.b1 PHD_FILE: MSMg01no354_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:52 2005CHROMAT_FILE: MSMg01no354_k14.g1 PHD_FILE: MSMg01no354_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGCGTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAAAG
AGGATCCGCGGAATTCAGGGTTTCATGATGGAAAGAAATGATGCCAAATG
TTGTCTTTAACATAGAAATGGTTATGAACTCATGAGCTTACCAGTTGCGG
TTGCTGGTGTAAAACCTGCACAGAATCAAGCCAGTTAATTCCAGCATCCC
AGGACAGCTAGGGCTCTACAGTAAAATCCTGCCTCGAAAAAAATGTGTGN
GTGTGTGTGTGTGTGTGTGTGTGNGTGTGTGTGTTTGTGTTTTTTTTNTT
TTTTTNNNTTTNNGNTGNGAAGTTTTTTTTTTTTTGGGGGGCGGGGGGGG
GGGGGTTGGNGAAANGGGTTATTACCTCCCTTTTCAATATGCNNTTCCTC
CNNCTCGTNCAATAAATTTNNCTTCCTCTCTTATATATATACTATTTCTT
CTCTCTTCTTCCCTTTTCTATTTTTANTCCCAGCCCTTTTTTTTACTTAT
TCTNCCCTTNTTATTCTCCCTTTNATTCTTCCCAATCCGCTTTATTCCCC
TCTCATTTGCTACCTCTTCGCCGCTTTNNNNCTTCGTTCTTTCNTTTTTC
TCCTTTCTTCTTCNTCCCTCCCTTTTTGCTNNTCTTCGCTTCTTCTTCTT
CCCTTTTTTCCGGNTNCCCTTCTTCTCCGCTTCCGNTCTATCGCACTTTT
CCNCGCTCCTTCCTTTTTTTTTTATCTTTCTTCCCTCCACGCGCCCGCCT
CCACATGNNTCGCTCTATTCCTTCCCCNCAN
CCCCCNTTTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAATGGAAAGGAA
AGTTTTCACCATGAGAAGGCCTCAGATTCATGCCCCTCCCTCAGTCTACA
CCGTAATAATCACACTACTGACAGCGTTCACCAGTGCAGGAAGTGTGGGA
AAGTCTTCAGTCGGATGTCATCCCTTTTACTTCATAAGAGGAGTCACAAC
AGAAAGAAAATACAAAAATACAATAAGTACAGAAGAGGCTTCAAAAAGCA
GGCAGTCCTTGTACATAAAAGAGTTTGTATTGGAAAGAAAACTCATGAAA
GTAAGCAGGCCTTAATTCCGAGTGCCAGGCCGAAAACTTGCCAGTCGGAA
AACCCTTTTATGTGTGGGAAGTGCGGGAAGTCCTTTAGTAGGATCTCAGC
CTTAATGCTCCATCAGGGAATTCACACTTCAGGGAATCCCTACAAATGTG
ATAAATGTCAGAAAGACTTTGGACGGCTCTCCACCCTTATTCTGCACCTA
AGAATTCATAGTGGGGAGAAGCAGTTTAAGTGCAGCAAGTGTGAGAAAGT
GTGTAGTTTGCCTTTCTCCTTTACTCCGCACCAGAAAATTCTAAAAGGAA
AAAGAAACTCATTGCATGTAATGAATGTGGAAAGATGTTTGGTTGGAAGA
AAATTCTTAAGTGCTTCTCCCCTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_k14.g1 MSMg01no354_k14.g1 CHROMAT_FILE:
MSMg01no354_k14.g1 PHD_FILE: MSMg01no354_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:52 2005
         (492 letters)



>mm_chr7_6256401_6257292
          Length = 892

 Score =  890 bits (460), Expect = 0.0
 Identities = 484/492 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatggaaaggaaagttttcaccatgagaaggcctcagattcatgcccctccctcagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatggaaaggaaagttttcaccatgagaaggcctcagattcatgcccctccctcagtc 260

                                                                       
Query: 61  tacaccgtaataatcacactactgacagcgttcaccagtgcaggaagtgtgggaaagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaccgtaataatcacactactgacagcgttcaccagtgcaggaagtgtgggaaagtct 320

                                                                       
Query: 121 tcagtcggatgtcatcccttttacttcataagaggagtcacaacagaaagaaaatacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtcggatgtcatcccttttacttcataagaggagtcacaacagaaagaaaatacaaa 380

                                                                       
Query: 181 aatacaataagtacagaagaggcttcaaaaagcaggcagtccttgtacataaaagagttt 240
           |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aatacaataaatacaaaagaggcttcaaaaagcagccagtccttgtacataaaagagttt 440

                                                                       
Query: 241 gtattggaaagaaaactcatgaaagtaagcaggccttaattccgagtgccaggccgaaaa 300
           ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct: 441 gtattggaaagaaaactcatgaaagtaagaaggccttaattcagagtgccaggcagaaaa 500

                                                                       
Query: 301 cttgccagtcggaaaacccttttatgtgtgggaagtgcgggaagtcctttagtaggatct 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 cttgccagtcggaaaacccttttatgtgtgggaaatgcgggaagtcctttagtaggatct 560

                                                                       
Query: 361 cagccttaatgctccatcagggaattcacacttcagggaatccctacaaatgtgataaat 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagccttaatgctccatcagagaattcacacttcagggaatccctacaaatgtgataaat 620

                                                                       
Query: 421 gtcagaaagactttggacggctctccacccttattctgcacctaagaattcatagtgggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcagaaagactttggacggctctccacccttattctgcacctaagaattcatagtgggg 680

                       
Query: 481 agaagcagttta 492
           ||||||||||||
Sbjct: 681 agaagcagttta 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)