BAC Information

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BAC

Clone NameMSMg01-355A13
Chromosome7 (Build37)
Map Location 28,331,989 - 28,332,431
singlet/doubletsinglet
Overlap genePld3
Upstream geneNlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4
Downstream gene2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355A13.T7 (MSMg01no355_a13.b1)MSMg01-355A13.TJ (MSMg01no355_a13.g1)
ACCAG465518AG465519
length753769
length of high quality
(start - end)		517 (46 - 562)443 (73 - 515)
definitionCHROMAT_FILE: MSMg01no355_a13.b1 PHD_FILE: MSMg01no355_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:22 2005CHROMAT_FILE: MSMg01no355_a13.g1 PHD_FILE: MSMg01no355_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGCTTCTCTTGCCTCTACCTTCCAAGTGATGGGAATACAGGTCA
CCACACTGGTGTGCCTTGTTCGTTTTAGAGACAGAATCAATCTCTCTCTC
TTTATTTATTTATTTGTTTATTTATTTATTATATGTATATCAATCTCTCT
AATTGTTTATTTGTTTATTATATGTAAGTAAGTACACTGTAGCTGTCTTC
AGGCACCCCAGAAGAGGGCATCTGATCTCATTATGGATGGCTGTGAGCCA
CCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGT
GCTCTTAACCGCTGAGCTATCTCAAAGGTAGCCCTGGTGCTCAGTATGTA
TTGCAGGTGGCCTGGGACTCAGTCCTTCTTCACTCCTAAGTGCTGGGGCC
ACAACTGCATCACCAGACCCCGCTGCCCTCTGAGTTTTAAGCAGAGCAAA
GGGCAAGCTGGTGGCTCCAGGCTTTTAAACATCCTGCTGTTTTTCTCCAT
ACACGCCCCTGAGCTCCCAAGTCCCCTGGGCTTCTCCTCTCAGCCCTAAA
TGTTTTGGGTCTTCCGCTGTCATGTGATAAGGCTGTTTTCCTCGTTGACC
CTGGTTTTTTGGTCTCTGTCCTCGTTTTCCCCTTTTTGATTTTTCTGGTC
ACATAGTTCCTTAACCTTTTGAATTAGTTTCTCCCCGGTTTTTGTCCCCT
GTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTTGAACT
CAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGCGTGCG
CCACCACGCCCGGCTGTGTCGTCTCTTTCAAGGAGCTGTGTGGCCGAGGT
GTGAAGGGTGGTGAGCGAGTAAACTCACGAGCGAGTAAGCTGCCCTGCTC
CCTGGGGGAAGATCTGGTCCAAAATTAAAGGTAAAAGAAAAGGTTCCTGG
AAAAGGAACAGATTTAGGAGAGATGCTAAGGAGAGCCAGATACATGGTGA
GTGGAAGGTCTGTGGGAACACAGTAGGCTATGAAACTTGCAGAGCTGGAG
TTCAGAGATGAAGAGGAAACTTAAGGGTTCTTTGGAAAGTTAATTGAATG
GTATTTGCTGGGGCAAACATGTGAAGGAACGTACTGTTAAAGTGGACACA
GGTGAAAGACTAAGGCAGACTCATGAAGGAACGTTTCACTGAAGCGGACA
CAGAATAAAGGATGTTCTGCTTAAACAGCATGTGAAAGGACATGTGATGA
ATGAATCTTCCTTAAGGAAATGCATGTCTCGGCCCACCTTACATTTGTGT
ACTTTAGCTTTCCTTTTTATATAACCCCTCCATATAAACTTGTGTGTGTC
TGACATTCTTTTTTTCTTCACAATAATTTTTCTCCTCTTTAAAAAAGATC
TTTTTTTATAAATTTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_a13.g1 MSMg01no355_a13.g1 CHROMAT_FILE:
MSMg01no355_a13.g1 PHD_FILE: MSMg01no355_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:22 2005
         (443 letters)



>mm_chr7_28331803_28332645
          Length = 843

 Score =  818 bits (423), Expect = 0.0
 Identities = 438/443 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 actctgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgc 570

                                                                       
Query: 61  tgggactaaaggcgtgcgccaccacgcccggctgtgtcgtctctttcaaggagctgtgtg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 569 tgggactaaaggcgtgcgccaccacgcccagctgtgtcgtctctttcaaggagctgtgtg 510

                                                                       
Query: 121 gccgaggtgtgaagggtggtgagcgagtaaactcacgagcgagtaagctgccctgctccc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 509 gccgaggtgtgaagggtggtgagcgagtaagctcacgagcgagtaagctgccctgctccc 450

                                                                       
Query: 181 tgggggaagatctggtccaaaattaaaggtaaaagaaaaggttcctggaaaaggaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 tgggggaagatctggtccaaaattaaaggtaaaagaaaaggttcctggaaagggaacaga 390

                                                                       
Query: 241 tttaggagagatgctaaggagagccagatacatggtgagtggaaggtctgtgggaacaca 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 389 tttaggagagatgctaaggagagccagatacatggtgaatggaaggtctgtgggaacaca 330

                                                                       
Query: 301 gtaggctatgaaacttgcagagctggagttcagagatgaagaggaaacttaagggttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtaggctatgaaacttgcagagctggagttcagagatgaagaggaaacttaagggttctt 270

                                                                       
Query: 361 tggaaagttaattgaatggtatttgctggggcaaacatgtgaaggaacgtactgttaaag 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggaaagttagttgaatggtatttgctggggcaaacatgtgaaggaacgtactgttaaag 210

                                  
Query: 421 tggacacaggtgaaagactaagg 443
           |||||||||||||||||||||||
Sbjct: 209 tggacacaggtgaaagactaagg 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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