BAC Information

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BAC

Clone NameMSMg01-355C03
Chromosome7 (Build37)
Map Location 95,006,881 - 95,007,265
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355C03.T7 (MSMg01no355_c03.b1)MSMg01-355C03.TJ (MSMg01no355_c03.g1)
ACCAG465594AG465595
length749754
length of high quality
(start - end)
528 (49 - 576)405 (77 - 481)
definitionCHROMAT_FILE: MSMg01no355_c03.b1 PHD_FILE: MSMg01no355_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:30 2005CHROMAT_FILE: MSMg01no355_c03.g1 PHD_FILE: MSMg01no355_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGTTTAGCTCTGTACCCCATTTTTAATTGAGTTATTTGTG
CTGCTTGTGTCAAACGTCTTTAGTTCTTTAAAAAAGATGGATATTGGTCC
TCTGTCAGATGTAGGATTGGAAAGATACTTTTCCAATCTGTAGGTTGCTG
TTTTGTCCTATAGACAATGTCCTTTGCCTAGAAGGAAAATTACAACCCAA
AAAAACATAGGACATAAGTAATTTCATTCCAGTAAAAACAAAACAATGGA
AGTACAGCACACACACACACATACACACACACACACATACACACACACAC
ACTCACACAGACTGCCAACATCAAAATAACAAGAATCAACAATCACTGAT
CATTAATATCTCTCAATATTCATGGACTCAAATATCCAAAAAAAAAAAAA
GACACAGGCTAGCAGAATAGATGTGAAAACAGGATCAATCACTCTGCTGA
CTATGAGAAACACACCTCAATAATAAAGATAGACATTATTTCAGAGGAAT
GGGCTCGAAAAAAGTTTTCTAAGGACATGGATACAAGCAGCAAGCTGGAG
TAGTACCTCTATAGAACATAGATTTTAAACCACAATTAATCAAAAGAAAG
AGAAGGACACTTCATCTTTCTCAAAAGACAAATCTATGAAGATGTTATCT
CATTTCTGAATATACATATCCCAAATTGAAGGGCATCTCCATTTGTTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTTCTCCTTACAGAAAGATAGA
AAAACCAAGGAGAAAGCAAACAGATAAAGCCTGTTAACAGATAAAGGGCT
GTCCATTTAGGAAATGTTAAACCCTGATCACAAATTGCAGATGTTTAACC
AGTATCTCCATGGTATAATCTTCACTGATAAGGTTATATTGAGAAATAAT
TGACCAAATCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTATCGATCTATCTATACTCTATAAT
ATATAGACACAGAAAACCTATATCATCCAACAGTTTAAAATCATCCTCAT
GATCTGGAGATAACAATTCCTATACTCAGTTTAGCATGTGTTGATAACTA
ACACACACGCACACACACACACACACACACACACACACACACACTCACTT
ACAATGGAGGACCCTTACATTACTACAATTACTCATATCTTTTAAAAGCT
TCAAAATGTATTTATCACAGGATTGTCCGCGGATGTGTAAGCGATAGGAT
TTATCTTTTATACCAATTGAAATGTATGTCCTGCTATTTACCCCTTTCCT
CACAAATTTTATTTTGCTTTTTTGTCCCCTTTTAATTTAAAGATCCTCTT
TACATAATTTTTGTTACTTCCTTTCTCTTTCTTAATATTTTTATTCTTTT
ATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_c03.g1 MSMg01no355_c03.g1 CHROMAT_FILE:
MSMg01no355_c03.g1 PHD_FILE: MSMg01no355_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:30 2005
         (405 letters)



>mm_chr7_95006461_95007265
          Length = 805

 Score =  698 bits (361), Expect = 0.0
 Identities = 379/385 (98%)
 Strand = Plus / Minus

                                                                       
Query: 21  tagaaaaaccaaggagaaagcaaacagataaagcctgttaacagataaagggctgtccat 80
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagaaaaaccaagtagaaagcaaacagataaagcctgttaacagataaagggctgtccat 746

                                                                       
Query: 81  ttaggaaatgttaaaccctgatcacaaattgcagatgtttaaccagtatctccatggtat 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaggaaatgttaaaccctgatcacaaattgcagatgtttaaccagtatctccatggtat 686

                                                                       
Query: 141 aatcttcactgataaggttatattgagaaataattgaccaaatctaatctctctctctct 200
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 aatcttcactgataaggttatattgagaaataattgaccaaatctaatatctctctctct 626

                                                                       
Query: 201 ctctctctctctctctctctctctctctctctctctctctctctctctctatcgatctat 260
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 ctctctctctctctctctctctctctctctctctctctctctctctctctctcgatctat 566

                                                                       
Query: 261 ctatactctataatatatagacacagaaaacctatatcatccaacagtttaaaatcatcc 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctatactctataatatatagacacagaaaacctatatcatccaacagtttaaaatcatcc 506

                                                                       
Query: 321 tcatgatctggagataacaattcctatactcagtttagcatgtgttgataactaacacac 380
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcatgatctggagataaaaattcctatactcagtttagcatgtgttgataactaacacac 446

                                    
Query: 381 acgcacacacacacacacacacaca 405
            | ||||||||||||||||||||||
Sbjct: 445 tcacacacacacacacacacacaca 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)