BAC Information

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BAC

Clone NameMSMg01-355K10
Chromosome7 (Build37)
Map Location 61,594,083 - 61,594,580
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355K10.T7 (MSMg01no355_k10.b1)MSMg01-355K10.TJ (MSMg01no355_k10.g1)
ACCAG465988AG465989
length758771
length of high quality
(start - end)
615 (44 - 658)498 (76 - 573)
definitionCHROMAT_FILE: MSMg01no355_k10.b1 PHD_FILE: MSMg01no355_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:09 2005CHROMAT_FILE: MSMg01no355_k10.g1 PHD_FILE: MSMg01no355_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTATATATATTGGGTATTAGTCCCTTATCTGATTTAGGATTGTTAA
AGATTCTTTCCCAATCTGTTAATGGATATCATCCTGAGTGAGATAACCCA
ATCACAAAAGAACTCACATTATATGCACTCTCTGATAAGTGGATATTAGC
CCAGAAACTTAGCATATCCAAGATACAATTTGCAAAACACATGAAACTCA
AGAAGAATGAAGACCAAAGTGTGGGTACTTTGTTCCTTCTTCGAATGAGG
AGCAAAATACCCATGAAAGGAGTTACAGAGACAAAGTTCAGAGCTGAGAC
AGAAGAGAGGACCATCCAGAGACTGCCTCACCCGGTGATCCATCCCATAT
ACAACCACCAAACCCACACACTATTGAATATTCGAGCAAGATTTTGCTGA
AGGGACCATGATATAGCTGTCTCTTGTGAGACTGTGCCAGTGCCTGGCAA
ATACAGAAGTGGATTCTCACAGTCATCTATTGGATGGAACACAGGGCCCC
TAAAGAAGGAGCTAGAGAAAGTACCCAAAGAACCAAAGGAGTCTGCAACC
CTATAGGGGAAACAACAATATGGACTAACTATTTCCCCCCAGAGCTGTGT
TTCTGGTTACATATGTAGCAGAAGATGGCCTAGTTGGCCATCAATAGGAG
GAGAGCCCCTTGGTATTGAGAAGATCATATGCCCCAGTACAGGGCAATGT
CAGGTCCA
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATAGAAACCAAGCATATTTCAGAT
TACATAAAATTATAATTGTCACTATAAAGCAAAAATTATGACTTCTAACA
GAGCAGAAAAAAATCATAATTGCAAAATAAGGGTTGTGAATACAAAGGAC
ACAGATGGAAAAATGAATTATTTATGGCAAAAAGATAAGCAAGGACAGGA
AGACTAAGAATGTGCAGGATATAGAACTCTTTCTCTGTCCTTTTGCTGTT
AGCCACACTCTTGTCAGACTCAGCCTCTTATCAGAACCCCAGGTTCTGTT
TTGGTCTATGCTAGGGAAGTGGAGAATGCTGTAGAGAAAAACTTACAGAA
CAAAAACACTTGGCCCTCAAGTCCAGAGGCCTTAGTCCTTGATGACCCAG
TTCCAAGCATTGGAGTAGAAGATCAGGATGTCAAGAGAGTGTGGGAAGCA
GATACTTGGCTGCCCAGAAGGAAGTGTGTTACCATTATTTTAATCACAAA
AGGGCTCAACATCTGACAGGCAGGGTGGCTAAAAAGGAATGGTGCATTTT
GCAGTCTAGCTTTTACAAACCAGATGGTGGCATGTTTTAGTCACTGAGTA
TCTAGAGTCAAAGTGACTTCCCAGTGCTAAAATATCTCTATTATATCTTA
AAACTGCGCTCCCCCATAATGTTACGAGCTAAAAGGTGGTTGGATTGATC
CCTCTCCTCTTCGATATCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_k10.g1 MSMg01no355_k10.g1 CHROMAT_FILE:
MSMg01no355_k10.g1 PHD_FILE: MSMg01no355_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:09 2005
         (498 letters)



>mm_chr7_61593883_61594780
          Length = 898

 Score =  940 bits (486), Expect = 0.0
 Identities = 495/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagaaaccaagcatatttcagattacataaaattataattgtcactataaagcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aatagaaaccaagcatatttcagattacataaaattataattgtcactataaagcaaaaa 639

                                                                       
Query: 61  ttatgacttctaacagagcagaaaaaaatcataattgcaaaataagggttgtgaatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttatgacttctaacagagcagaaaaaaatcataattgcaaaataagggttgtgaatacaa 579

                                                                       
Query: 121 aggacacagatggaaaaatgaattatttatggcaaaaagataagcaaggacaggaagact 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aggacacagatgggaaaatgaattatttatggcaaaaagataagcaaggacaggaagact 519

                                                                       
Query: 181 aagaatgtgcaggatatagaactctttctctgtccttttgctgttagccacactcttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aagaatgtgcaggatatagaactctttctctgtccttttgctgttagccacactcttgtc 459

                                                                       
Query: 241 agactcagcctcttatcagaaccccaggttctgttttggtctatgctagggaagtggaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agactcagcctcttatcagaaccccaggttctgttttggtctatgctagggaagtggaga 399

                                                                       
Query: 301 atgctgtagagaaaaacttacagaacaaaaacacttggccctcaagtccagaggccttag 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atactgtagagaaaaacttacagaacaaaaacacttggccctcaagtccagaggccttag 339

                                                                       
Query: 361 tccttgatgacccagttccaagcattggagtagaagatcaggatgtcaagagagtgtggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 338 tccttgatgacccagttccaagcattggagtagaagatcaggatgtcaagagagtatggg 279

                                                                       
Query: 421 aagcagatacttggctgcccagaaggaagtgtgttaccattattttaatcacaaaagggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aagcagatacttggctgcccagaaggaagtgtgttaccattattttaatcacaaaagggc 219

                             
Query: 481 tcaacatctgacaggcag 498
           ||||||||||||||||||
Sbjct: 218 tcaacatctgacaggcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)