BAC Information

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BAC

Clone NameMSMg01-356E11
Chromosome7 (Build37)
Map Location 117,581,356 - 117,581,856
singlet/doubletsinglet
Overlap geneSbf2
Upstream geneStk33, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, LOC668246
Downstream geneAdm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356E11.T7 (MSMg01no356_e11.b1)MSMg01-356E11.TJ (MSMg01no356_e11.g1)
ACCAG466459AG466460
length741744
length of high quality
(start - end)
277 (43 - 319)500 (75 - 574)
definitionCHROMAT_FILE: MSMg01no356_e11.b1 PHD_FILE: MSMg01no356_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:57 2005CHROMAT_FILE: MSMg01no356_e11.g1 PHD_FILE: MSMg01no356_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGTGCCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGATGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ACTGGATATAGTACTACCGTTTTTATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTATCACATTCTCAAAGGA
ACTCACACTATATGTACTCATTGACAAGGGGATATTATTCCGAATCCTAG
GATATCCAATATTTTAGATACATTTTCCCTAAACACATGTAAACTCATTA
TTAATGACGACCTGAAGTGTTGGACACTAAGCCTCTTCCTT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTCAAAGGAAGGTCCAACCAC
AAATGTAGAACTTGAGCATAACTGAGTGGAATACGGGGAACACCTTGGAA
GTATAGTGGATACAGAGCATGCACAAGGCTCTGGGTTCAGTCCTCAACAC
ATGCACACATGCATTTACATACAAGCAAAGAAAATAATTCAGTAATATGT
AATAAGGTATTTAGTATTTCTGCTTTTAACTTACTGGCCTCAGATTTCAA
ATGAATGTGACAAAGCAGTGATTAATGTCTCACTGTTAGGTCATTGGCCT
TGTCAAAGAGCTAGATTAAACAATACCCATTGGGGCCAGGGCACTAATAT
CAAGTTCTTCTTCACTCTAATTCCTTAAAACAACTTCCCTCTGTTTTTCT
TCAGAGGTGCCACATTCCCCACTTGATTTATGTTTAACAGAGGAACCACA
ACTGTCTCAAGAAGGAGTGGCCAGCACTCACTTAGCACAGAACCACTATT
CCTTAAGCATGTAGCCTCCCTGCCAGCCTAAGAATTCAGGTGGGTAGTTC
ACTTCATCCTGATCTTTATATTACAACACTTCTGTCCAGAGTGAATTTTC
ATCTTTTGAGCTTCTGTGGTTCACTTGTCGGGTTTCTTTCCTTCTTCCCC
CCTAGTTCTTATACTTTTTACTTTCCACACCCTTAACTTATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_e11.g1 MSMg01no356_e11.g1 CHROMAT_FILE:
MSMg01no356_e11.g1 PHD_FILE: MSMg01no356_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:58 2005
         (500 letters)



>mm_chr7_117581156_117582056
          Length = 901

 Score =  930 bits (481), Expect = 0.0
 Identities = 496/501 (99%), Gaps = 1/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctctcaaaggaaggtccaaccacaaatgtagaacttgagcataactgagtggaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctctcaaaggaaggtccaaccacaaatgtagaacttgagcataactgagtggaatac 260

                                                                       
Query: 61  ggggaacaccttggaagtatagtggatacagagcatgcacaaggctctgggttcagtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ggggaacaccttggaagtatagtggatacagagcatgcacaaggctctgggtttagtcct 320

                                                                       
Query: 121 caacacatgcacacatgcatttacatacaagcaaagaaaataattcagtaatatgtaata 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacacatgcacaaatgcatttacatacaagcaaagaaaataattcagtaatatgtaata 380

                                                                       
Query: 181 aggtatttagtatttctgcttttaacttactgg-cctcagatttcaaatgaatgtgacaa 239
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aggtatttagtatttctgcttttaacttactggtcctcagatttcaaatgaatgtgacaa 440

                                                                       
Query: 240 agcagtgattaatgtctcactgttaggtcattggccttgtcaaagagctagattaaacaa 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagtgactaatgtctcactgttaggtcattggccttgtcaaagagctagattaaacaa 500

                                                                       
Query: 300 tacccattggggccagggcactaatatcaagttcttcttcactctaattccttaaaacaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacccattggggccagggcactaatatcaagttcttcttcactctaattccttaaaacaa 560

                                                                       
Query: 360 cttccctctgtttttcttcagaggtgccacattccccacttgatttatgtttaacagagg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttccctctgtttttcttcagaggtgccacattccccacttgatttatgtttaacagagg 620

                                                                       
Query: 420 aaccacaactgtctcaagaaggagtggccagcactcacttagcacagaaccactattcct 479
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccacaaccgtctcaagaaggagtggccagcactcacttagcacagaaccactattcct 680

                                
Query: 480 taagcatgtagcctccctgcc 500
           |||||||||||||||||||||
Sbjct: 681 taagcatgtagcctccctgcc 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space:   436590
Effective search space used:   436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)