BAC Information

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BAC

Clone NameMSMg01-356G03
Chromosome7 (Build37)
Map Location 135,930,496 - 135,930,895
singlet/doubletsinglet
Overlap genenone
Upstream geneSetd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
Downstream geneLOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356G03.T7 (MSMg01no356_g03.b1)MSMg01-356G03.TJ (MSMg01no356_g03.g1)
ACCAG466538AG466539
length732757
length of high quality
(start - end)
467 (47 - 513)400 (76 - 475)
definitionCHROMAT_FILE: MSMg01no356_g03.b1 PHD_FILE: MSMg01no356_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:05 2005CHROMAT_FILE: MSMg01no356_g03.g1 PHD_FILE: MSMg01no356_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGTATCAATACCGAATGGCAGAGAAGCACTTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAACTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTATA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATCAAAAAGAATGAATTTATGAAATTCCTAGGCA
AATGGATGGACCTGGAGGGGTTCATCCTGATTGAGGTAACACATTCACTA
AGAACCTTCCACTATATGTATTCCCCGATAGGTGTATATCATCCCCAAGC
CCACGATACCCGGGATTTTTTATATTCTTTGCTAATCCCCCTTTTTTTCA
CACAAATGATTACCGCTCCGTGGACTCCTATT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGGGAAGGCAGGGACAGGCAGAG
ACCAGGATAGCCCAGCTGGTGAGTCCCAAGTGGCAGTGAGAGATCCTGCC
TCAAAAAACAAGGTGGGTGGCATTTATGAGGAAGGACATTAGAAGCTGAC
CTTGGTCTCCACATGCATGCTCATGTACACACATCTAGTGTAGGAAGTGT
CCCTAGCCTGTGTCCCCAGCCCTGAGCTCTTGGTAGTCACTGCTGAAGGT
TGGCTCTCTGCTCTTGCTTCACCCCTGCTTCCTCTGCTCCTGGTTGTCAC
AATAAACGCCATTCTTCTTCCAGGGCCTCTGCTTCAGTTCTTGACTCTAG
GTTCCTTCCCTCACCTCCATAATGGACATAAACTTTTAAGCTGAATAAAC
CCCTTCCTCCAAAGTTGTTCTTGGGTGTGTTGTTTTAACCTAATATATTA
ATCCTATCTACGGTCTTATCTGCTTTCTGATGGCATTTGAGGCCCCTCTT
CGAGTTTGAATCCTTGCCGGGCTTCATACTCCTCTTTGTTCCTATCCACT
TTCTACTCCCCCCTTCTTAATATTTCATCATTTGCTTCTTGCGTTTTAAC
ATGCTTTGCGCTTTATTTATTCTCTTTTTCACCTTTTTCTTTGTTTCCCC
TTTTTCTCCTCAATTCCTATTATCTTTTTGCCCTCTCGCCCCTTTTTTCT
CACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_g03.g1 MSMg01no356_g03.g1 CHROMAT_FILE:
MSMg01no356_g03.g1 PHD_FILE: MSMg01no356_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:05 2005
         (400 letters)



>mm_chr7_135930296_135931095
          Length = 800

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggaaggcagggacaggcagagaccaggatagcccagctggtgagtcccaagtggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgggaaggcagggacaggcagagaccaggatagcccagctggtgagtcccaagtggca 260

                                                                       
Query: 61  gtgagagatcctgcctcaaaaaacaaggtgggtggcatttatgaggaaggacattagaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtgagagatcctgcctcaaaaaacaaggtgggtggcatttatgaggaaggacatcagaag 320

                                                                       
Query: 121 ctgaccttggtctccacatgcatgctcatgtacacacatctagtgtaggaagtgtcccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaccttggtctccacatgcatgctcatgtacacacatctagtgtaggaagtgtcccta 380

                                                                       
Query: 181 gcctgtgtccccagccctgagctcttggtagtcactgctgaaggttggctctctgctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgtgtccccagccctgagctcttggtagtcactgctgaaggttggctctctgctctt 440

                                                                       
Query: 241 gcttcacccctgcttcctctgctcctggttgtcacaataaacgccattcttcttccaggg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gcttcacccctgcttcctctgctcctggtcgtcacaataaacgccattcttcttccaggg 500

                                                                       
Query: 301 cctctgcttcagttcttgactctaggttccttccctcacctccataatggacataaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctgcttcagttcttgactctaggttccttccctcacctccataatggacataaactt 560

                                                   
Query: 361 ttaagctgaataaaccccttcctccaaagttgttcttggg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaagctgaataaaccccttcctccaaagttgttcttggg 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)