BAC Information

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BAC

Clone NameMSMg01-356L05
Chromosome7 (Build37)
Map Location 139,150,720 - 139,262,616
singlet/doubletdoublet
Overlap geneGpr26, Cpxm2
Upstream geneDmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356L05.T7 (MSMg01no356_l05.b1)MSMg01-356L05.TJ (MSMg01no356_l05.g1)
ACCAG466779AG466780
length755758
length of high quality
(start - end)
499 (43 - 541)440 (72 - 511)
definitionCHROMAT_FILE: MSMg01no356_l05.b1 PHD_FILE: MSMg01no356_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:30 2005CHROMAT_FILE: MSMg01no356_l05.g1 PHD_FILE: MSMg01no356_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,262,122 - 139,262,616)(139,150,720 - 139,151,159)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAACCATCTTTCTCTCCCTAGATCCTAATAACTATTATCACCGACGT
AATGAGATGACCACCACGGATGACCTGGATTTTAAGCACCACAACTATAA
GGAAATGCGCCAGGTAAGACCAGAGTATGATAATTCGATATGACTTTTAA
AGAGAACATCAGGGCATGAACTGATAAGTACTATGTATGATCCCTCTGGG
CAGCCAAACGGAGCCTCCTCTGCTAGGAAATGGCTGAAATGGGGCTTAAA
ACTAGATGTTTGGCATTGAAGTCTTTAGTCCCTAAAGCTTTTGTGTGTCA
GCTGGGTCACTGACTGAAGGAAGTTAATGACTGTGGACTTGAGGGTGAGA
GGGTGCTCATGGTAAAACAGGAGGCTTTCTCATGGTTCTGCGTGCTTCCA
CAATTAACCTCCATTAATGTCTTCAGTGCTTTTAAAAGCCCAGGACAGTA
GGGACTGTAATTACCTTCTCTTATCAATGGGGAAACTGAGTCACTGTGGT
ATTGTATAGCACTCTTACCTCTTGCCACAATATTCAGATTTTTAGCTTAA
TCCTGGCTGTCCCCTANAGTATCCCAGACATTTTTTTACTGCGTATTTTA
TTTATTACACTTCTAATGGTGTCCCCCCTCCCAGTTTCCCTTCAAAAGTC
CCCCTTCCTCCCCCCTCTTGGTTTGTCTCCAAGAAGATGCTTCCCCACCC
CACCN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCCCCACACGTCCACCCACACAGCCCTC
AAAAGCTAAAGTGGTACATGGGTTTCAGTTGCCACTGCAGCAGAAGGGAC
TTAATTTCCACCATATGGGGAAAGAAGGCCTTTGGGTGCCTGTTTCTGGC
CTTCTCTCCTCCTCTCTCCTCATCCATGTTCCTTGTGTGACATTTTTAAA
CAACCTAAATTCACAGGTGAGACCACTTTCTCCACCTACTTCATTTCCAA
GATGGTGAGAGAGTAGAGAATTGTCCAAAGGTCAAATAGGTTCAGAGACA
AGACCACAATTCTGACACCCCTTGGCTTCCAGAACAAAGTTTGCCAGCAA
CATGATACTTCCAGACCAAGTTCTCTCTCCATTGACAAGTACTAGACAAT
GACATTCAGGTGAGGATTCCTCTAGTGAACTTCCAAGGATGAGATATGAC
TGCTTTCCTTGACCTATGGTGGGGACACGTCAAGGGAGTTTTTGGATGTC
CACCAATAAAGGTGAGGAGAGCTGTGCCTTCCTTTTTTTCCTGGTCACTT
ACACAATAATGTGCTTATTGCCTTTTTCCGTCCCGGTATAACACGAGTGT
TCATCCATGTCTGATCACTTTATCCTTNTGTTAACTTTTTTCTCTCCCGC
TTGTTTTGCATTTTACACTTTTCTTTATTATACATCCCTTTTTTTTTCTT
TATCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_l05.b1 MSMg01no356_l05.b1 CHROMAT_FILE:
MSMg01no356_l05.b1 PHD_FILE: MSMg01no356_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:30 2005
         (499 letters)



>mm_chr7_139261918_139262816
          Length = 899

 Score =  926 bits (479), Expect = 0.0
 Identities = 491/495 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaccatctttctctccctagatcctaataactattatcaccgacgtaatgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaattccaaaccatctttctctccctagatcctaataactattatcaccgacgtaatgag 640

                                                                       
Query: 65  atgaccaccacggatgacctggattttaagcaccacaactataaggaaatgcgccaggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 atgaccaccacggatgacctggattttaagcaccacaactataaggaaatgcgccaggta 580

                                                                       
Query: 125 agaccagagtatgataattcgatatgacttttaaagagaacatcagggcatgaactgata 184
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agaccagagtatgggaattcgatatgacttttaaagagaacatcagggcatgaactgata 520

                                                                       
Query: 185 agtactatgtatgatccctctgggcagccaaacggagcctcctctgctaggaaatggctg 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agcactatgtatgatccctctgggcagccaaacggagcctcctctgctaggaaatggctg 460

                                                                       
Query: 245 aaatggggcttaaaactagatgtttggcattgaagtctttagtccctaaagcttttgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaatggggcttaaaactagatgtttggcattgaagtctttagtccctaaagcttttgtgt 400

                                                                       
Query: 305 gtcagctgggtcactgactgaaggaagttaatgactgtggacttgagggtgagagggtgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtcagctgggtcactgactgaaggaagttaatgactgtggacttgagggtgagagggtgc 340

                                                                       
Query: 365 tcatggtaaaacaggaggctttctcatggttctgcgtgcttccacaattaacctccatta 424
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 339 tcatggtaaaacaggaggctttctcatggttctgcatgcttccacaattaacctccatta 280

                                                                       
Query: 425 atgtcttcagtgcttttaaaagcccaggacagtagggactgtaattaccttctcttatca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atgtcttcagtgcttttaaaagcccaggacagtagggactgtaattaccttctcttatca 220

                          
Query: 485 atggggaaactgagt 499
           |||||||||||||||
Sbjct: 219 atggggaaactgagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no356_l05.g1 MSMg01no356_l05.g1 CHROMAT_FILE:
MSMg01no356_l05.g1 PHD_FILE: MSMg01no356_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:30 2005
         (440 letters)



>mm_chr7_139150520_139151359
          Length = 840

 Score =  851 bits (440), Expect = 0.0
 Identities = 440/440 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccccacacgtccacccacacagccctcaaaagctaaagtggtacatgggtttcagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccccacacgtccacccacacagccctcaaaagctaaagtggtacatgggtttcagttg 260

                                                                       
Query: 61  ccactgcagcagaagggacttaatttccaccatatggggaaagaaggcctttgggtgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactgcagcagaagggacttaatttccaccatatggggaaagaaggcctttgggtgcct 320

                                                                       
Query: 121 gtttctggccttctctcctcctctctcctcatccatgttccttgtgtgacatttttaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttctggccttctctcctcctctctcctcatccatgttccttgtgtgacatttttaaac 380

                                                                       
Query: 181 aacctaaattcacaggtgagaccactttctccacctacttcatttccaagatggtgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctaaattcacaggtgagaccactttctccacctacttcatttccaagatggtgagag 440

                                                                       
Query: 241 agtagagaattgtccaaaggtcaaataggttcagagacaagaccacaattctgacacccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagagaattgtccaaaggtcaaataggttcagagacaagaccacaattctgacacccc 500

                                                                       
Query: 301 ttggcttccagaacaaagtttgccagcaacatgatacttccagaccaagttctctctcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggcttccagaacaaagtttgccagcaacatgatacttccagaccaagttctctctcca 560

                                                                       
Query: 361 ttgacaagtactagacaatgacattcaggtgaggattcctctagtgaacttccaaggatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgacaagtactagacaatgacattcaggtgaggattcctctagtgaacttccaaggatg 620

                               
Query: 421 agatatgactgctttccttg 440
           ||||||||||||||||||||
Sbjct: 621 agatatgactgctttccttg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)