BAC Information

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BAC

Clone NameMSMg01-357B03
Chromosome7 (Build37)
Map Location 132,589,014 - 132,589,481
singlet/doubletsinglet
Overlap geneJmjd5
Upstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014
Downstream geneNsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357B03.T7 (MSMg01no357_b03.b1)MSMg01-357B03.TJ (MSMg01no357_b03.g1)
ACCAG467061AG467062
length739749
length of high quality
(start - end)
483 (76 - 558)471 (75 - 545)
definitionCHROMAT_FILE: MSMg01no357_b03.b1 PHD_FILE: MSMg01no357_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:58 2005CHROMAT_FILE: MSMg01no357_b03.g1 PHD_FILE: MSMg01no357_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGAGAGGAGGCGCGG
AATTCTCAAAAATTTCTTTAGAAAGCTAGTATATAACCCAGCTATAACAC
TCTGTAGTGTATACTCAAATGACCAGACATCGAGAGGCCCACCCATGGAA
CGAATGAGCAGAAGACACTGAGAACTTAGCCGGCTGCCAGGGTGAGTGAG
CTACACACAGCCAGGGACCCACAGGCTTTTTGGCTCAGTGGCAGTGGGAG
CCACTACAATGTGCAAGTATGTAGTGGACAGATAGAAGAGAAAGAAGTGT
GACCGTTTGAGCACTATGAAGAGAGGGGAAACTGGAGATGGGACAGTGGA
GAGGAACAGCCCTACCACCTGAGGCCAAGGTAAAGTCCCAGCCACTGCTG
TGTCTGGGTCCATGGCCATGTAGCATCAGGGATCTGTGTTGATGTCTGTA
GCTCATACTACCACTAAAGACCATGCGGATGCCTAGTCTGGGCTACTACC
TGGATCATATTAATGTCTAAGGGCTATGTAGAGCTGGCTCCACCTCACTG
GCTGTGGCACTCTAGCAAACTGTCCCCACCTCTCACTGGTTGCAGCACCT
GGGAAATCAGGCCTGTACCTACCTTACCTGGGCAGTACATTAGAGCTGGC
CCCGAAGGTGCGGGTACTAGCGAGTGACCCCTTATGTCGAACTGGTACAT
CTGGCCCTGCCTCTTTTTACCTGCCCCTCGGTTGTATTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCACCTAAACCAGGAGACTATAAAT
TTAAGAGCCTAGACAAACAAAACCGGGGGTTATTGTTGGTAAAATGACAC
CCACAATCACCCAAACACAGGCCACATGTACCAGCCTCAATGGCCTCATA
TGTTCCAGTATAAGTTTCTCTCCCACAGTGCAACAGTTACTAGGCCTTAA
AGACATCTTGCTGGCCATTGCTTTGCTTTTGAAGTTGGTAGGGGCTGTGT
CCTTGTTTGCAAGGTGGCCTTCTGGTATTCTACATTCACGTGTCAGGCAA
AAGGCACTGCTTTCAAGTAATGACCAGGTGCGGGTTGCACAAAACAACGT
TTCTCTGTAGCCTTAATTCTAAAAGGTCTTTAAATAAAGGCCCATTTGGT
GGTGTACAAAACGACGCTTTTTGTGAAAGGGTGTCACCCAAAGGGTGCAG
GATCTAATCTGTGTGGTTCTATCTGGACTTCCTAAGTGAACTAAGCTGCT
CACACCAAAACCAAAGGAGTCTAGAACGGGGCCGAACGGATTCAAGCCTT
GCTTCCTAAGTGCACTTTTTGGGGATGCATTTATAAAACTCTTTTTTGGT
TGCCAAGTGGGATGTTGGTAAGTCTTATACTGAAACACCGTCCTATGGAA
AGACAATGTTATTCTTTTTCTTTAATACCCGGTTGTTTTTTCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_b03.g1 MSMg01no357_b03.g1 CHROMAT_FILE:
MSMg01no357_b03.g1 PHD_FILE: MSMg01no357_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:58 2005
         (471 letters)



>mm_chr7_132588814_132589681
          Length = 868

 Score =  826 bits (427), Expect = 0.0
 Identities = 459/471 (97%), Gaps = 3/471 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accacctaaaccaggagactataaatttaagagcctagacaaacaaaaccgggggttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 accacctaaaccaggagactataaatttaagagcctagacaaacaaaaccgggggttatt 609

                                                                       
Query: 61  gttggtaaaatgacacccacaatcacccaaacacaggccacatgtaccagcctcaatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gttggtaaaatgacacccacaatcacccaaacacaggccacatgtaccagcctcaatggc 549

                                                                       
Query: 121 ctcatatgttccagtataagtttctctcccacagtgcaacagttactaggccttaaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 548 ctcatatgttccagtataagtttctctcccacagtgcaacagttaataggccttaaagac 489

                                                                       
Query: 181 atcttgctggccattgctttgcttttgaagttggtaggggctgtgtccttgtttgcaagg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 488 atcttgccggccattgctttgcttttgaagttggtaggggctgtgtctttgcttgcaagg 429

                                                                       
Query: 241 tggccttctggtattctacattcacgtgtcaggcaaaaggcactgctttcaagtaatgac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 428 tggccttctggtattctacattcacgtgtcaggcaaaaggcactgctttcaagtaatggc 369

                                                                       
Query: 301 caggtgcgggttgcacaaaacaacgtttctctgtagccttaattctaaaaggtctttaaa 360
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 368 caggtgcgggttgcacaaaac---gtttctctgtagccttaattctaaaaggtctttaaa 312

                                                                       
Query: 361 taaaggcccatttggtggtgtacaaaacgacgctttttgtgaaagggtgtcacccaaagg 420
           |||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 311 taaaggcccatttgttggtgtacaaaacgacgctttttgcgaaaggatgtcacccaaagg 252

                                                              
Query: 421 gtgcaggatctaatctgtgtggttctatctggacttcctaagtgaactaag 471
           |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 251 gtgcaggatctaatctgtgtggttctatctgggcttcctaagtgaactaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 868
Length adjustment: 10
Effective length of query: 461
Effective length of database: 858
Effective search space:   395538
Effective search space used:   395538
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)