BAC Information

Click to search

BAC

Clone NameMSMg01-357C01
Chromosome7 (Build37)
Map Location 13,689,056 - 13,689,682
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156
Downstream geneV1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357C01.T7 (MSMg01no357_c01.b1)MSMg01-357C01.TJ (MSMg01no357_c01.g1)
ACCAG467105AG467106
length739776
length of high quality
(start - end)
627 (73 - 699)---
definitionCHROMAT_FILE: MSMg01no357_c01.b1 PHD_FILE: MSMg01no357_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:02 2005CHROMAT_FILE: MSMg01no357_c01.g1 PHD_FILE: MSMg01no357_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTTATGTTCCCTAAAAAGATATGTTGACCTTTGTGAAAGTCAGATT
TGCATGTTATGAGGAATTTAAAAATTATTTATTCTATATGTAGGAGTGTT
TTGCCTGCAATGTCTGTGTATTATATACATGCTTCGGAATCAGACCCTGG
ATCTCTGGAAGAGCAGCTAATGGTCTTTAACTGCTGAGACATCTGTCCAG
CCCCAATGAATTTCTATTCATCAGTTTATATTTTTTTTAACTAAGTATCA
ATGTCTTTATGCTTACAACATCATTTGCTTCTATCACCTATGTAGTAATG
TGTGTACTTGACCTTTAGTGTTTGCGTTGCGCATAAGTTTCTGTCAGCTT
TTCATGATTAAATACTTAGACTTTTCATGTGGGATTCTTTGCCTTTCATT
CTACTGTACAGTGTGTTCTCAGGCATTTCATTTCATTTTATCTGTTTATT
TTGCTCACATATGAGAGCTGAACAGCCAATAGGCAGAACACTATGGCCAG
TGTAAAACTATACATCCCACAGTATTGAGCACAGCACATCTTCACAAAAA
TGTTTTTTTCTGTGATATTTGATGACCAAATCAATCAGGCTGATTTTGAT
TGATAAACACTCTAACAAAGATTTGTATATTTTGTTATTGCAATGTCTGG
ATTCTATTTACACTTGAAGGTTCTTTTGTATTCATGTTA
CACGCTTTTGAACACAAAAAGAATACCCCCCAGTTTTCTTTTTAATATAT
CATGTTTTAACATATTGCTTCCCGACAACTGTTTTTTTAATAAAAATCGA
AGAAGACGCAAAGCCCATCCGATTACACATTTGCGGGGATAGCACAAAGA
ATTGAGTGCCGGAGGTGCATTTGCTCAGGCGCAACTCCCGCACCTTCTCT
CTTATTGAAACTTGGGTGTCTCAATCGGCTCGCCCTAAGTCTAAGGTAAT
TTATTCTATTGATGCAATGGGTTAGAGCGACAGGGGAGGGTGATTAAAAT
GAAATATATATACATCTTAGATTAGTGTGTAGGTGGATTCTAATTCTCCT
ACCGGGTTTTTTGGGAAGGAGAAGGTTAATCTTGGTTTATAGAGTTTAAA
TTTAAGTCACGTTTATTTCTTAAGCGCGTGCATAAGGTGTCAGTCTTTTT
CATTGCGCTCTCTCGTCACAACAAAAACGGGCGCTACGCGTGTGTTATGT
GTATTCCGTTTTTCGTTCCTGCTCTGTTCTGCACCCCGCGCTCATTTCAT
TGTACCTATATTATAATGAGTCTTCGTACTTTAGTTAGTTGTNNNNNNNG
TCCGGGCTTNTATTNNNGGCTGAGATGATGGATGAGGNTGNNAGTCGTGG
AGCAAGACGNGCCCGTGGTTGNGCTAGGAACAGGTANNNANGTGGNNACC
NTTNNAGGGANGANNGNATTTGCGNANNGNAGNNNAGCTTGNANCGTGNG
TNNNATCCCNNNANCNGACTNGGNTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_c01.b1 MSMg01no357_c01.b1 CHROMAT_FILE:
MSMg01no357_c01.b1 PHD_FILE: MSMg01no357_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:02 2005
         (627 letters)



>mm_chr7_13688856_13689882
          Length = 1027

 Score = 1205 bits (623), Expect = 0.0
 Identities = 626/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgttgacctttgtgaaagtcagatttgcatgttatgaggaatttaaaaattatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgttgacctttgtgaaagtcagatttgcatgttatgaggaatttaaaaattatttat 260

                                                                       
Query: 61  tctatatgtaggagtgttttgcctgcaatgtctgtgtattatatacatgcttcggaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctatatgtaggagtgttttgcctgcaatgtctgtgtattatatacatgcttcggaatca 320

                                                                       
Query: 121 gaccctggatctctggaagagcagctaatggtctttaactgctgagacatctgtccagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccctggatctctggaagagcagctaatggtctttaactgctgagacatctgtccagcc 380

                                                                       
Query: 181 ccaatgaatttctattcatcagtttatattttttttaactaagtatcaatgtctttatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatgaatttctattcatcagtttatattttttttaactaagtatcaatgtctttatgc 440

                                                                       
Query: 241 ttacaacatcatttgcttctatcacctatgtagtaatgtgtgtacttgacctttagtgtt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacaacaacatttgcttctatcacctatgtagtaatgtgtgtacttgacctttagtgtt 500

                                                                       
Query: 301 tgcgttgcgcataagtttctgtcagcttttcatgattaaatacttagacttttcatgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcgttgcgcataagtttctgtcagcttttcatgattaaatacttagacttttcatgtgg 560

                                                                       
Query: 361 gattctttgcctttcattctactgtacagtgtgttctcaggcatttcatttcattttatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattctttgcctttcattctactgtacagtgtgttctcaggcatttcatttcattttatc 620

                                                                       
Query: 421 tgtttattttgctcacatatgagagctgaacagccaataggcagaacactatggccagtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtttattttgctcacatatgagagctgaacagccaataggcagaacactatggccagtg 680

                                                                       
Query: 481 taaaactatacatcccacagtattgagcacagcacatcttcacaaaaatgtttttttctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaactatacatcccacagtattgagcacagcacatcttcacaaaaatgtttttttctg 740

                                                                       
Query: 541 tgatatttgatgaccaaatcaatcaggctgattttgattgataaacactctaacaaagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgatatttgatgaccaaatcaatcaggctgattttgattgataaacactctaacaaagat 800

                                      
Query: 601 ttgtatattttgttattgcaatgtctg 627
           |||||||||||||||||||||||||||
Sbjct: 801 ttgtatattttgttattgcaatgtctg 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)