Query= MSMg01no357_c20.b1 MSMg01no357_c20.b1 CHROMAT_FILE:
MSMg01no357_c20.b1 PHD_FILE: MSMg01no357_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:06 2005
(472 letters)
>mm_chr7_140289058_140289929
Length = 872
Score = 828 bits (428), Expect = 0.0
Identities = 458/468 (97%)
Strand = Plus / Minus
Query: 5 gaattccctgggaaacttaaaaacttgtagctcactctctcaaaactatcagtggtctag 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 782 gaattccctgggaaacttaaaaacttgtagctcactctcacaaaactatcagtggcctag 723
Query: 65 ggagagacctgttttggttaaagtttctggtgattctagtgggccaccaacacaccttta 124
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 722 ggacagacctgttttggttaaagtttccggtgattctagtgggccaccaacacaccttta 663
Query: 125 acaccgtctctcggttccactgagagctggaaagaacacctggaagccctaactttcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 acaccgtctctcggttccactgagagctggaaagaacacctggaagccctaactttcctg 603
Query: 185 tctcccaggcttggcagagtcagtgcagggactaggggctgctgtgagagcctcagcctt 244
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 602 cctcccaggcttggcagagtcagtgcagggactaagggctgctgtgagagcctcagcctt 543
Query: 245 tcacaaaatacctaaatgacagtgtgtctccatctcccttggggctgtatagttgagcag 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 542 tcacaaaatacctgaatgacagtgtgtctccatctcccttggggctgtatagttgagtag 483
Query: 305 taccatgaaatttcctccactttcctctgaaaaggggcactggcttcctatcaacagggt 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 taccatgaaatttcctctactttcctctgaaaaggggcactggcttcctatcaacagggt 423
Query: 365 gaaggtcgtcttatgtcaatgtatgcccttcaaccagggagatactttataggaggaggt 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 422 gaaggtcgtcttatgtcaatgtatgaccttcaaccagggagatactttataggaggaggt 363
Query: 425 tgctgtgagattgctgttggtccagccagcatccatgaatcttaaagt 472
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgctgtgagattgctgttggtccagccagcatccatgaatcttaaagt 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_c20.g1 MSMg01no357_c20.g1 CHROMAT_FILE:
MSMg01no357_c20.g1 PHD_FILE: MSMg01no357_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:06 2005
(408 letters)
>mm_chr7_140112870_140113675
Length = 806
Score = 677 bits (350), Expect = 0.0
Identities = 402/432 (93%), Gaps = 26/432 (6%)
Strand = Plus / Plus
Query: 1 ttttggcatgttggaattatgaagccacattacataagagatatttttttgtcgtcttct 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ttttggcatgttggaattatgaagccacattacat--gagatatttttttgtcgtcttct 258
Query: 61 ggaagttttcttgtacatatctacatatgaaacatgattgtagcaaggtttatattcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggaagttttcttgtacatatctacatatgaaacatgattgtagcaaggtttatattcaac 318
Query: 121 agcttttgtgatgaaagggattccctatcttttttgtttatttttcacctttagtttgt- 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 agcttttgtgatgaaagggattccctatcttttttgtttatttttcacctttagtttatt 378
Query: 180 ---ttattta--c--gtatttacttattta---------c---ttatttatttatttatt 220
||||||| | |||||| ||||||| | |||||||||||||||||
Sbjct: 379 tacttatttattcatttatttatttatttatctatctatctatttatttatttatttatt 438
Query: 221 t----agacaaggtttctatgtgtagtcctggctgttctggatctcactctgtggaccag 276
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tattaagacaaggtttctatgtgtagtcctggctgttctggatctcactctgtggaccag 498
Query: 277 gctggcctcaaactcagaaattcccctgcctctaccttctaagtgctgggattaaaggca 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gctggcctcaaactcagaaattcccctgcctctaccttctaagtgctgggattaaaggca 558
Query: 337 tgtgccaccactgcccggctgcttatttatttttaaatggaaacaaaattccaaatctcc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtgccaccactgcccggctgcttatttatttttaaatggaaacaaaattccaaatctcc 618
Query: 397 ttccacagggga 408
|| |||||||||
Sbjct: 619 tttcacagggga 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 806
Length adjustment: 9
Effective length of query: 399
Effective length of database: 797
Effective search space: 318003
Effective search space used: 318003
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
