BAC Information

Click to search

BAC

Clone NameMSMg01-357H03
Chromosome7 (Build37)
Map Location 114,131,457 - 114,131,871
singlet/doubletsinglet
Overlap geneGA_x5J8B7W6B6J-1784824-1783474
Upstream geneLOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711
Downstream geneOlfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357H03.T7 (MSMg01no357_h03.b1)MSMg01-357H03.TJ (MSMg01no357_h03.g1)
ACCAG467345AG467346
length755763
length of high quality
(start - end)
552 (44 - 595)496 (74 - 569)
definitionCHROMAT_FILE: MSMg01no357_h03.b1 PHD_FILE: MSMg01no357_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:26 2005CHROMAT_FILE: MSMg01no357_h03.g1 PHD_FILE: MSMg01no357_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCTATACCTAAACATAATAAAAGCAATATACAGCAAACCAGTA
GCCAACATCAAAGAAATTGGAGAGAACCTGGAAGCAATCCCATTAAAATC
GGGGATTAGACAAGGCTGCACGCTGTCTCCCTACCTATTCAATATAGTAC
TTGAAGTCCTAGCCAGAGCAATTCAAAAACAAAAGGAGGTCAAGGGGATA
CAAATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGAAACAAT
AGTATATATGTTATCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATA
AACAGCTTCAGTGAAGTAGCTGGATATAAAATTAAATCAAACAAATCAGT
GGCCTTTGTCTACACAAAGGATAAACAGGCTGAGAAAGGAATTAGGGAAA
CAGCACCCTTCACAATAGTCACAAATAATATAAAGTACCTTGGTGTGACT
CTAACTAAGGAAGTGAAAGATCTGTATTATAAGAACTTCAAGTCTCTGAA
GAAAGAAATCAAAGATCTCAGAAGATGGAAAAATCTCCCATGCTCATGGA
TTTTGGATCACTATAATAAATATGGCTATCTTGCCAAAAGCAATCTACAG
ATTCATAGCCATCCTCATCAAAAACTAACTCATTCTTCCACGAATTATAA
AGGGAAATTGTAAATTTCTCTGGAGAACAAAATCTAAGAAAGCCAACTTC
TTCTN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCATCTATTGCCCAAGGAATCAGGA
AGTCAAGGATGCTATCAAGACACTAGAAGGTGGCCTGTGCTTCCTGGTCA
GGTTATCACCCTGCTTTAAGAAGACATTATTCTTCCACAATATATCATGA
CAGTGACTGTGGACCTGTTCTTCACAGATATAAATTCTTTTTTTTTTTTC
CGAGACAGGGATTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGT
AGACCAGGCTGGCCTTGAACTCAGAAATCCGCTTGCCTCTGCCTGAAATC
ACAGTAGAAAAGCACAGAAAACAAAAACCTAAGCTCAAAATAGAAGCCAG
ACACTATGTATTACTATAACTGGAAACAATTAGTTTTTGTATAGACATGT
CAGTAACTTACAAATGATATATTGGTTCAATATATTGAATATTTCTTACA
GATTTATTGCATATAATTATATGCTTAGCATTTATTTCGTATATGAAAAG
TGTTAAAGTAAAACTAATATTCCCAGAAAATATCTACTTGTTCCTTGCAA
ATTTGAAAAAAATTCTAAGATCCTTAAATTAATGATCCTGTTTGTAATTT
TATGGTGGTTACCTGGTGAAACTTTTAGGGAGAATCTTAAGTTCGGATTA
AAAACAATTTTTTAAAAATTCACCATTGGGGGCCACAAGCTTTTAAAATA
TTGGTACCATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_h03.g1 MSMg01no357_h03.g1 CHROMAT_FILE:
MSMg01no357_h03.g1 PHD_FILE: MSMg01no357_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:26 2005
         (496 letters)



>mm_chr7_114130976_114131871
          Length = 896

 Score =  775 bits (401), Expect = 0.0
 Identities = 410/415 (98%), Gaps = 4/415 (0%)
 Strand = Plus / Minus

                                                                       
Query: 86  ccctgctttaagaagacattattcttccacaatatatcatgacagtgactgtggacctgt 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ccctgctttaagaagacattattcttccacaatatatcatgacagtgactgtggacctgt 837

                                                                       
Query: 146 tcttcacagatataaattc----ttttttttttttccgagacagggattctctgtgtagc 201
           |||||||||||||||||||    ||||||||||||| |||||||||||||||||||||||
Sbjct: 836 tcttcacagatataaattcttttttttttttttttctgagacagggattctctgtgtagc 777

                                                                       
Query: 202 tctggctgtcctggaactcactctgtagaccaggctggccttgaactcagaaatccgctt 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tctggctgtcctggaactcactctgtagaccaggctggccttgaactcagaaatccgctt 717

                                                                       
Query: 262 gcctctgcctgaaatcacagtagaaaagcacagaaaacaaaaacctaagctcaaaataga 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gcctctgcctgaaatcacagtagaaaagcacagaaaacaaaaacctaagctcaaaataga 657

                                                                       
Query: 322 agccagacactatgtattactataactggaaacaattagtttttgtatagacatgtcagt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agccagacactatgtattactataactggaaacaattagtttttgtatagacatgtcagt 597

                                                                       
Query: 382 aacttacaaatgatatattggttcaatatattgaatatttcttacagatttattgcatat 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aacttacaaatgatatattggttcaatatattgaatatttcttacagatttattgcatat 537

                                                                  
Query: 442 aattatatgcttagcatttatttcgtatatgaaaagtgttaaagtaaaactaata 496
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aattatatgcttagcatttatttcgtatatgaaaagtgttaaagtaaaactaata 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)