BAC Information

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BAC

Clone NameMSMg01-357I07
Chromosome7 (Build37)
Map Location 112,647,781 - 112,648,140
singlet/doubletsinglet
Overlap genenone
Upstream geneAI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp
Downstream geneSmpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357I07.T7 (MSMg01no357_i07.b1)MSMg01-357I07.TJ (MSMg01no357_i07.g1)
ACCAG467400AG467401
length756770
length of high quality
(start - end)		349 (72 - 420)394 (77 - 470)
definitionCHROMAT_FILE: MSMg01no357_i07.b1 PHD_FILE: MSMg01no357_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:32 2005CHROMAT_FILE: MSMg01no357_i07.g1 PHD_FILE: MSMg01no357_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGTATAGCCATCTCAAATGTCTGAGGAACACTTAAATGCAG
AGCCCTGTGCCATCTGGGGCATGAACTCAGTGGAGGGTCCCAAGGTCCCC
AGAGGATTCTCCATGCTGCAGGCACCCTAGCACACCCAGGATCTTGAGAT
CATTGAGACCAGTCTACACAGGAGAGCACGTGGGCAGAAGAAACAACAGA
GCTTCTTGGACAGGGTCCCTTTGAGCCTTCATCCTCAGCCAGGAGGCAGA
GCTGAGACCCAGACCCCTAGGCACTTTCCCAACAAGAGGAGAGTCAGCCT
CCAGTAAGGGCTCTGACCCCAGGACTCAGGAGGTAGATCTGAGCTCCAGA
CTTTTATGCACCTTCCCTGCAAGAGGAGAGTTTGCCTGCCTAGAGTGCTC
TGAACACTGCAACTCATGAAAGAGTTGTAGTCCCAGGAGCACTGTCAGAG
GCTATCGAATCTCATTGAGGACCAAGTTCCAGTCAGAGACAGCTCATACA
TCCAACACCCTATATTACCTTATGTCTTATGGCCAACCTTACGAATCTTA
CTATTCATAAACCTACATTCTTTTATTTTCTTAATCTTTCCAGGTTACTA
CATTATTCTCCCTATATGAACTACTTTGATACTCCCTGCCTCCAACCGGT
TTTAAATTCCCCTATACCCCGTTATCCCCCCTCTCTTCACTATATCAATT
CCTTGC

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATTGATGGCAGTCTAGGACC
TGTCTCTGCCTGACCTGGTTGTGGCTCAGCCATTAAGCGTACTCGCTGCT
CTTGAAGATAACATGGGCTCCGTTCCCAGCACCCATTGTGGCTCACAACC
ATTCAGAACTTCAGTTCCAGGGGTCGGAAACTCTCTTCTGGGAGACCAGG
TGCACATGATGTACACACATGTATGCAGGCATTACACTCATATAAATGCA
AACAAATAAATCCTTTTTAAAAAGAAGAGAAAGAGGAAGCACACCGGCAG
GTCACAAACAGCTGAAAAATGTTGAGAAAAGGATGTAGGAGACAGCAGTG
GAGAGGAAGCTAGTCAAGTTGAACGGAGCTCCAGCCTTCAGTCTCCCTGC
AGGGTAGTGGGGAGGTCGGGGAGGGTAAGTACAATCAGCTCTGGGGAAGA
GATGCAGACACTACTACCGGTTGAATTATCCTCTGCGATCTCACAAATCC
CCCCATCATTTTGTGATCCCTGGTTTCGTTGAGTCAAGAACTCTTCCTTA
CACTCATTTCAAATCAGTTAATTCGCTCCCTCTTTTTCTTTTCCATTTCT
CTGTGCCCCTTATATGTTTATTCTTTGTCTTTCCATGTCTCTGTTTCTTT
CCTTCACCCCCTTTTTTCCTCCTGTTTTTTACTTGTTTTTTCCTTTTTTT
CTGTTCCTCTTTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_i07.g1 MSMg01no357_i07.g1 CHROMAT_FILE:
MSMg01no357_i07.g1 PHD_FILE: MSMg01no357_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:32 2005
         (394 letters)



>mm_chr7_112647347_112648140
          Length = 794

 Score =  665 bits (344), Expect = 0.0
 Identities = 356/360 (98%)
 Strand = Plus / Minus

                                                                       
Query: 35  tgacctggttgtggctcagccattaagcgtactcgctgctcttgaagataacatgggctc 94
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 794 tgacctggttgtggctcagccattaagcgtactcgctgctcttgcagataacatgggctc 735

                                                                       
Query: 95  cgttcccagcacccattgtggctcacaaccattcagaacttcagttccaggggtcggaaa 154
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cgttcccagcacccatcgtggctcacaaccattcagaacttcagttccaggggtcggaaa 675

                                                                       
Query: 155 ctctcttctgggagaccaggtgcacatgatgtacacacatgtatgcaggcattacactca 214
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 674 ctctcttctgggagaccaggtgcacatggtgtacacacatgtatgcaggcataacactca 615

                                                                       
Query: 215 tataaatgcaaacaaataaatcctttttaaaaagaagagaaagaggaagcacaccggcag 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tataaatgcaaacaaataaatcctttttaaaaagaagagaaagaggaagcacaccggcag 555

                                                                       
Query: 275 gtcacaaacagctgaaaaatgttgagaaaaggatgtaggagacagcagtggagaggaagc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtcacaaacagctgaaaaatgttgagaaaaggatgtaggagacagcagtggagaggaagc 495

                                                                       
Query: 335 tagtcaagttgaacggagctccagccttcagtctccctgcagggtagtggggaggtcggg 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tagtcaagttgaacggagctccagccttcagtctccctgcagggtagtggggaggtcggg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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