BAC Information

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BAC

Clone NameMSMg01-357I18
Chromosome7 (Build37)
Map Location 89,995,237 - 89,995,713
singlet/doubletsinglet
Overlap genenone
Upstream geneTm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986
Downstream geneLOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357I18.T7 (MSMg01no357_i18.b1)MSMg01-357I18.TJ (MSMg01no357_i18.g1)
ACCAG467420AG467421
length767785
length of high quality
(start - end)		477 (62 - 538)418 (73 - 490)
definitionCHROMAT_FILE: MSMg01no357_i18.b1 PHD_FILE: MSMg01no357_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:34 2005CHROMAT_FILE: MSMg01no357_i18.g1 PHD_FILE: MSMg01no357_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGCCACTGCTTGGTGGCAAGTGTTTTTTACTTATTGAGTCATCTCCACC
CCCCTCCTTGTGTCTTTAATAAGTGTATTGATGATACATGGCCAAGGCTA
GGTGTCTTGAGACAACCAGAACCTACACTTGGTCCATTAAACAGAATGGT
CACTTTTCTATTCCTCTTAAAACTGATCAGAAGGTGATGAAAGGCCCCTT
ACTTTCACACAGACATGCAGCAATATCTTAAAAGTCAGAGACAGACACTC
CCCCCAAAGACAAATGAGTAAACTGAGGGAGCCCCATTTCTGCTCTGTGA
AATCTTCCCTAATGGCCACGGCAGCTGAACTGAAGGAAGCCCAACTTTGG
AGTTCTGCTTCAGCTCCCTGAACCCATCTGTCACCCGAAGGAAAAAAAGC
CAGCACTTATGTCTGAGAGCAAGGCATCTCCAAAGCACCAGGGGACCAGT
CTATTCAAAGAACAATGGGGTGAGTACAGCACTAATGAGGGGATCCCAGC
TTTGGGGCTTTAGCAGCGATGTTTCCCTCTGGGGCCCCTTCTGCTGAGTG
TCAAGTGAGTAACACAACCTGTGACCAGAAGCTTTCCCACCTGGGTCCAC
AAGCTCACCTGGGGAATTGCCGCCCCAGGTGTGCCCACCGGTACCCATTC
TGGGTGTGACCCAAGAAAAAAAAAACCTGGGGGCCCGGAGTTAAAAAAAT
CTCCAATTGCGGTTGGG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGGTGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACAGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAACCAAATGGAAGGACCTGGAGGGCATCCTCCTGAAGGAG
GTAACACCTTTCCCAAGAAACTCCCCCAAATGGTTTCCCTGATAAAGGGA
ATTAAACCCCACCCTCGGAAACCCAAAATATAAAAAAAATTTGGTTAACC
CCCGAACCCCCCAAAAAAAAAAAACGGAGCGGGGAGCTTTTCCCCCCCTT
AATTTGTGAAAAAACCCCCTGTTAGGGGTGTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_i18.b1 MSMg01no357_i18.b1 CHROMAT_FILE:
MSMg01no357_i18.b1 PHD_FILE: MSMg01no357_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:34 2005
         (477 letters)



>mm_chr7_89995037_89995915
          Length = 879

 Score =  876 bits (453), Expect = 0.0
 Identities = 471/477 (98%), Gaps = 2/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtggcaagtgtttttt-acttattgagtcatctccacccccctccttgtgtctttaat 59
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtggcaagtgtttttttacttattgagtcatctccacccccctccttgtgtctttaat 260

                                                                       
Query: 60  aagtgtattgatgatacatggccaaggctaggtgtcttgagacaaccagaacctacactt 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgtattgatgatacatggcaaaggctaggtgtcttgagacaaccagaacctacactt 320

                                                                       
Query: 120 ggtccattaaacagaatggtcacttttctattcctcttaaaactgatcagaaggtgatga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtccattaaacagaatggtcacttttctattcctcttaaaactgatcagaaggtgatga 380

                                                                       
Query: 180 aaggccccttactttcacacagacatgcagcaatatcttaaaagtcagagacagacactc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggccccttactttcacacagacatgcagcaatatcttaaaagtcagagacagacactc 440

                                                                       
Query: 240 cccccaaagacaaatgagtaaactgagggagccccatttctgctctgtgaaatcttccct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccaaagacaaatgagtaaactgagggagccccatttctgctctgtgaaatcttccct 500

                                                                       
Query: 300 aatggccacggcagctgaactgaaggaagcccaactttggagttctgcttcagctccctg 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggccacggcagctgaactgaacgaagcccaactttggagttctgcttcagctccctg 560

                                                                       
Query: 360 aacccatctgtcacccgaaggaaaaaaa-gccagcacttatgtctgagagcaaggcatct 418
           |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct: 561 aacccatctgtcacccgaagaaaaaaaaagccagcacttatggctgagagcaaggcatct 620

                                                                    
Query: 419 ccaaagcaccaggggaccagtctattcaaagaacaatggggtgagtacagcactaat 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaagcaccaggggaccagtctattcaaagaacaatggggtgagtacagcactaat 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 879
Length adjustment: 10
Effective length of query: 467
Effective length of database: 869
Effective search space:   405823
Effective search space used:   405823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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