BAC Information

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BAC

Clone NameMSMg01-357M07
Chromosome7 (Build37)
Map Location 76,908,690 - 77,086,650
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357M07.T7 (MSMg01no357_m07.b1)MSMg01-357M07.TJ (MSMg01no357_m07.g1)
ACCAG467587AG467588
length764748
length of high quality
(start - end)		367 (47 - 413)467 (78 - 544)
definitionCHROMAT_FILE: MSMg01no357_m07.b1 PHD_FILE: MSMg01no357_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:51 2005CHROMAT_FILE: MSMg01no357_m07.g1 PHD_FILE: MSMg01no357_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,086,288 - 77,086,650)(76,908,690 - 76,909,153)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTACTGCCCAGTCCTTAGTCCTTCCTCTAACTTCTCCCAGAT
GCACCCCAACCTCTCCACCCCTGCCAGTTTTATATCCTCTTCTTTTTTTA
ATGCACACAACCCAATTAGTCTTATTTGTGCTGCTCATATGCTCTGGGAT
GTGGAACAGTTCCTGGAGATGTTCAATCTACCAGAGGCCAGACTTAAAAC
AGTCAAACGCCAGTGACTTCTCTGCAAGAGGTGGGTGCTCATGAACTAAT
GTGTGTTCATGGGTGAAATGGTCCTGCCTTCACTAGAAGGTATCATTTTG
CTCTGGCTCTCCATGACTTCTTTCCTCCTTTTCTGGAACAGTGCCCCCAT
CCCCACTTTGAGGGGGGAAGGGTATAATTACAAATTTTCTATTGATCTCT
GATCAACCCATAGGCATATTATCTATACTTTGATCATTTGCTGTTACTGT
ACAATCTCACTGCCATCGCTCCATCTTGTTTCTTTTGATCCCTCTCTCAG
ACATTATAATATCTAGAGTTAGTTCAATCCTTACCTTTCAACCTGTTCTA
ATTACTTTCGCCTCTTGTTATTTACCTTTTTGTTCCTATTGTATTTATTT
TTTATCACCTTTGTAGCTCTACTTATTCCTCTTTATTTCGTTCCCTCTAT
TCCTTGTTCCCCTACCTCTTCCTTCTTTCTCCTCCATTCTTACCCTTTCC
TCCCTTCGCTTACC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCAGCAGTGACAAGGAATAA
GGATATATATAAGAACTATATGAGTTCAGAGGGAATGTTGCCAAAGGCAA
GCATACACACCACATGATTATACTTACATGATCATCCTGGAATGATAAAA
TTAAGTAGAAGATGTAGGTATGACTAGAAAATTAAAGGATTTAAATAAGG
GATGAAAGCAGGGGAAAGTAGCTATGCTCATGAAAAATAAGTAACATCAG
GGATCTTTATCTAGATGGCAATGTTCTCACCTCTGGTTTTTAACAAGTTA
AACAACTGCAGAAAAATAAAATATGGACATTGTGAACATATGATACACAG
TCATAAGTAGGTGTAAATATGAAAGATTGTTTCTAGTTTCTGCATCTGGA
ATTCTAAAGTGCTACGAAGGGTAGATAGTATTACCAAGCTTTGTTTCATA
CAAATACATGTACATTTACCCTCTCCTGGGCATATATCCAGAAGATGCCC
CAACTGGTAAGAAGGAACATGCTCCACTATGTTCTTAGCAGCCCTTATTT
ATATACCCAGAACCTGGAAACAAACCTTATGCCCCTTCTCCGAAGAAAGG
AAACAGAAAAATGTGGTTTACCTACCCCATGCGATACTACCCACCTTATT
TACACAAATGAAATTTTCGAAACTCCCAGTCTAATGGGGGGGCGCGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_m07.b1 MSMg01no357_m07.b1 CHROMAT_FILE:
MSMg01no357_m07.b1 PHD_FILE: MSMg01no357_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:51 2005
         (367 letters)



>mm_chr7_77085886_77086652
          Length = 767

 Score =  663 bits (343), Expect = 0.0
 Identities = 358/363 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttactgcccagtccttagtccttcctctaacttctcccagatgcaccccaac 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gaattcacttacagcccagtccttagtccttcctctaacttctcccagatgcaccccaac 706

                                                                       
Query: 65  ctctccacccctgccagttttatatcctcttctttttttaatgcacacaacccaattagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 705 ctctccacccctgccagttttatatcctcttctttttttaatgcacacaactcaattagt 646

                                                                       
Query: 125 cttatttgtgctgctcatatgctctgggatgtggaacagttcctggagatgttcaatcta 184
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 645 cttatttgtgctgctcatatgctcaaggatgtggaacagttcctggagatgttcaatcta 586

                                                                       
Query: 185 ccagaggccagacttaaaacagtcaaacgccagtgacttctctgcaagaggtgggtgctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ccagaggccagacttaaaacagtcaaacgccagtgacttctctgcaagaggtgggtgctc 526

                                                                       
Query: 245 atgaactaatgtgtgttcatgggtgaaatggtcctgccttcactagaaggtatcattttg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 525 atgaactaatgtgtgttcatgggtgaaatggtcctgccttcactagaaggcatcattttg 466

                                                                       
Query: 305 ctctggctctccatgacttctttcctccttttctggaacagtgcccccatccccactttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctctggctctccatgacttctttcctccttttctggaacagtgcccccatccccactttg 406

              
Query: 365 agg 367
           |||
Sbjct: 405 agg 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_m07.g1 MSMg01no357_m07.g1 CHROMAT_FILE:
MSMg01no357_m07.g1 PHD_FILE: MSMg01no357_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:51 2005
         (467 letters)



>mm_chr7_76908487_76909353
          Length = 867

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   tcagcagtgacaaggaataaggatatatataagaactatatgagttcagagggaatgttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcagcagtgacaaggaataaggatatatataagaactatatgagttcagagggaatgttg 263

                                                                       
Query: 64  ccaaaggcaagcatacacaccacatgattatacttacatgatcatcctggaatgataaaa 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 ccaaaggcaagcatacacaccacatgattatacttacatggtcatcctggaatgataaaa 323

                                                                       
Query: 124 ttaagtagaagatgtaggtatgactagaaaattaaaggatttaaataagggatgaaagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaagtagaagatgtaggtatgactagaaaattaaaggatttaaataagggatgaaagca 383

                                                                       
Query: 184 ggggaaagtagctatgctcatgaaaaataagtaacatcagggatctttatctagatggca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggggaaagtagctatgctcatgaaaaataagtaacatcagggatctttatctagatggca 443

                                                                       
Query: 244 atgttctcacctctggtttttaacaagttaaacaactgcagaaaaataaaatatggacat 303
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 atgttctcacctctggtttttaacaacttaaacaactgcagaaaaataaaatatggacat 503

                                                                       
Query: 304 tgtgaacatatgatacacagtcataagtaggtgtaaatatgaaagattgtttctagtttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtgaacatatgatacacagtcataagtaggtgtaaatatgaaagattgtttctagtttc 563

                                                                       
Query: 364 tgcatctggaattctaaagtgctacgaagggtagatagtattaccaagctttgtttcata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcatctggaattctaaagtgctacgaagggtagatagtattaccaagctttgtttcata 623

                                                       
Query: 424 caaatacatgtacatttaccctctcctgggcatatatccagaag 467
           ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caactacatgtacatttaccctctcctgggcatatatccagaag 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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