BAC Information

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BAC

Clone NameMSMg01-358C03
Chromosome7 (Build37)
Map Location 150,658,832 - 150,878,472
singlet/doubletdoublet
Overlap geneSlc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5
Upstream geneLsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c
Downstream geneMrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn, Ppfia1, Fadd, Tmem16a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358C03.T7 (MSMg01no358_c03.b1)MSMg01-358C03.TJ (MSMg01no358_c03.g1)
ACCAG467862AG467863
length720750
length of high quality
(start - end)		529 (65 - 593)395 (65 - 459)
definitionCHROMAT_FILE: MSMg01no358_c03.b1 PHD_FILE: MSMg01no358_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:19 2005CHROMAT_FILE: MSMg01no358_c03.g1 PHD_FILE: MSMg01no358_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,878,037 - 150,878,472)(150,658,832 - 150,659,222)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCTCA
TAGTATTTCCTTGCGCATCTTACCCTGCTGTCTCCCTAAGAGATCTGCCT
TCTCAGAGCCTGATGAGGGCTGTAGCCAGGAGTTGGGGAAGACAAGAGAC
TGCGAGGTATGTTGCTCAGTGGTAGAATGCCTGTCTAGCACATATGAAGG
CCTGGGGTCAGTCCTAGCACAGCATAAACACAGCATGATGGTACACACCT
ATCACCCAGTACTCCAGAGGTCACATGAGAGATGAAGAGTTAAGGTCATC
TTCTGCTACATTAAGTTCAAGACCAGCCTCACATACTTGAAACCTACTCT
AAAAAAATGGGACTAGGAGGAAGTGGTCCAAGGCTAGGATCTCCCTGAGC
TGCAAGGATAACGTGAGAGGTTGGTTGGGTTCTGTCCATTGTCCAGCCCC
TGACTCTGACCCTGCCTCTGCCCTGGTGAGACTCTTGGCTCCTTTGCTCT
TACTGAGCAATCTTGTCTCCCAACATTGTTCCCACATCTGCAGTGGATCA
TGTCTTGGTGACTCATCTCTAAGGCTTACAAGCTAGCTGAGCCTGCATCC
CCTCCTAACCTTTCCCTGTCTCTCTTGTGTCTGTGCCTGGCTCCTGAGAG
TGTTAAATCACGAGGTGGGGCCCGCCAGGACATCCTAGCTTACCCTGGGC
TGTTTCTCCCTGCTTTCCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACTGTAGCCATAGCTACCTCAACAAGATCAAGGCAA
TAGCATCAGTCAACAGTCTAACAAGTGGCACTCACAGAACTCTAAAGTGA
AAGAGAGAGGAGAAATAGAGAGAGACAGAGACAGAGAGAATGAAAGAAGA
AAGAGATATATTGGAGGTTATTAGAGGGGAAATGGGAAGAGAAAGTTAAG
TGTGCATACAAACAAGATACATTGTATACATGTATGAAATTGGCAAAAGT
AAACAAATGATATCCATTAAATAGGTCACCTGCACACAGTAGGTACTCAA
TGGTTATGGATGAAGGAGGTTCCTGCTTCATAGACACATCATTAGGCCCA
GGAAATCATATAGGCAGCATCTCTCTTCTTGGGGAAGCTCCGGGCTATCC
TGAACCCCAGCACATAGTAGTCACTTTCTCTGCACCTGTGGCCATGCTCA
CACCCCTCTATTTTTGTCCCTAACCCCGCATGACCCCCTAAGTCTATCCC
CCCTCAGGTGTTCTCAGTTTCGCCGATCTTACCCCTATGTCCTGGCCTTT
TTGTTCCTTTTTTGCCGGACTTTCCTTTCCCTTCACCCGTTTTCTTTTGG
GCCTTTTCCCCCAATCACCCCTCCTTTGCCTATTTTTTCCCCCCCACACT
GGACTTTTTTTTTTTTTATTTTTTCTCTTCCCCCTTTCCCCCCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_c03.b1 MSMg01no358_c03.b1 CHROMAT_FILE:
MSMg01no358_c03.b1 PHD_FILE: MSMg01no358_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:19 2005
         (529 letters)



>mm_chr7_150877544_150878472
          Length = 929

 Score =  835 bits (432), Expect = 0.0
 Identities = 435/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 94  tatgttgctcagtggtagaatgcctgtctagcacatatgaaggcctggggtcagtcctag 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 tatgttgctcagtggtagaatgcctgtctagcacatatgaaggcctggggtcagtcctag 870

                                                                       
Query: 154 cacagcataaacacagcatgatggtacacacctatcacccagtactccagaggtcacatg 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cacagcataaacacagcatgatggtacacacctatcacccagtactccagaggtcacatg 810

                                                                       
Query: 214 agagatgaagagttaaggtcatcttctgctacattaagttcaagaccagcctcacatact 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agagatgaagagttaaggtcatcttctgctacattaagttcaagaccagcctcacatact 750

                                                                       
Query: 274 tgaaacctactctaaaaaaatgggactaggaggaagtggtccaaggctaggatctccctg 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgaaacctactctaaaaaaatgggactaggaggaagtggtccaaggctaggatctccctg 690

                                                                       
Query: 334 agctgcaaggataacgtgagaggttggttgggttctgtccattgtccagcccctgactct 393
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agctgcaaggataacatgagaggttggttgggttctgtccattgtccagcccctgactct 630

                                                                       
Query: 394 gaccctgcctctgccctggtgagactcttggctcctttgctcttactgagcaatcttgtc 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaccctgcctctgccctggtgagactcttggctcctttgctcttactgagcaatcttgtc 570

                                                                       
Query: 454 tcccaacattgttcccacatctgcagtggatcatgtcttggtgactcatctctaaggctt 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcccaacattgttcccacatctgcagtggatcatgtcttggtgactcatctctaaggctt 510

                           
Query: 514 acaagctagctgagcc 529
           ||||||||||||||||
Sbjct: 509 acaagctagctgagcc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_c03.g1 MSMg01no358_c03.g1 CHROMAT_FILE:
MSMg01no358_c03.g1 PHD_FILE: MSMg01no358_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:19 2005
         (395 letters)



>mm_chr7_150658632_150659426
          Length = 795

 Score =  717 bits (371), Expect = 0.0
 Identities = 386/391 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtagccatagctacctcaacaagatcaaggcaatagcatcagtcaacagtctaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtagccatagctacctcaacaagatcaaggcaatagcatcagtcaacagtctaacaa 260

                                                                       
Query: 61  gtggcactcacagaactctaaagtgaaagagagaggagaaatagagagagacagagacag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggcactcacggaactctaaagtgaaagagagaggagaaatagagagagacagagacag 320

                                                                       
Query: 121 agagaatgaaagaagaaagagatatattggaggttattagaggggaaatgggaagagaaa 180
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaatgaaagaagaaaggggtatattggaggttattagaggggaaatgggaagagaaa 380

                                                                       
Query: 181 gttaagtgtgcatacaaacaagatacattgtatacatgtatgaaattggcaaaagtaaac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gttaagtgtgcatacaaacaagatacattgtatacatgtatgaaattggcaaaaataaac 440

                                                                       
Query: 241 aaatgatatccattaaataggtcacctgcacacagtaggtactcaatggttatggatgaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgatatccactaaataggtcacctgcacacagtaggtactcaatggttatggatgaa 500

                                                                       
Query: 301 ggaggttcctgcttcatagacacatcattaggcccaggaaatcatataggcagcatctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaggttcctgcttcatagacacatcattaggcccaggaaatcatataggcagcatctct 560

                                          
Query: 361 cttcttggggaagctccgggctatcctgaac 391
           |||||||||||||||||||||||||||||||
Sbjct: 561 cttcttggggaagctccgggctatcctgaac 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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