BAC Information

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BAC

Clone NameMSMg01-358H19
Chromosome7 (Build37)
Map Location 91,592,875 - 91,796,649
singlet/doubletdoublet
Overlap geneLOC100039239, Fah, Zfand6
Upstream geneEG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2
Downstream gene2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358H19.T7 (MSMg01no358_h19.b1)MSMg01-358H19.TJ (MSMg01no358_h19.g1)
ACCAG468131AG468132
length747744
length of high quality
(start - end)		488 (36 - 523)496 (64 - 559)
definitionCHROMAT_FILE: MSMg01no358_h19.b1 PHD_FILE: MSMg01no358_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:46 2005CHROMAT_FILE: MSMg01no358_h19.g1 PHD_FILE: MSMg01no358_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,796,166 - 91,796,649)(91,592,875 - 91,593,370)
sequence
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTGT
TTTCTTATCATTTTACTGCAAACTCCTTGGCATGGTTAATAAGCTTTTCA
CAGTGTTACCTTAGTCTGTTTCTAAGGTTGTTTCCAGTGTTTGATATTCC
AAGTGCATAGAATTCTTGCCCAGGAAGAATGCAGTTGTGCATCTGTTAGC
TGTGGACACATTGAGCATATACTAGTGAAAACTGAGACAGCAATGGAATT
GCTAGGCAATATAACCTATGGAACTACCGGCCATTTATTGAAGTGCTGTT
GTGTGGAGTTTGTACTTGTTTTTATCCTTCTGCAATGACAAATGCTCACT
ATAAACAATTAGAAAGTTTGTATTAGCAAAATAACTGACACATTATTTTA
TGAGCTTGAGTTATAAACCATTCCCTGATACTGCTGGCTGAGAGAGAGAG
TGGTATCATCTCAGGTAGAGGTGAGGCATTTTCAACTAATTCCTAACAAG
TGATCTATTATGTGGTAAGCAGGCCTTTGAGGCAGTGTCCTTGTTGAACC
ACGACTGCAGACAAATAATCTTGGAGTAACAACTGCAGGTGCAGATGTAA
AAGTCACCCCAATCTAATGGGAGGTTAGNACTGCTTTTCTTATTGCTGCC
GGGGTTTTCATAAACATTGAAGGGGGTCCTCCTAAAAATCCGGTGGAACA
AAAAAAACAGGATCCTTTGGGCGGGTGGGGGCAACCCCTTTTACCCC

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGGATGTTACAGTGGTGAGCAGACCTCTCCCTCCCCT
ATATAAATTCCTCATCCAATCTCTTCATTGCTAGTGGATTTGGTCGGTCC
AAATTCTGGTTTTCCAAAGGACCCTGTTCTTAATCTCTGCTTTAGGTGGT
AGCATAGCTTCTGTGAGACTCTGCTTTCATTGACTGTCTGGAAATTGTCA
CTAGCTCTGTACTGTCCTGTAAATTCCATGGAGTTTTGTGACATCATTGC
TGACAACCTAGTTCCAGGGCATAGCAGTATCTCAACCTGGCTACAAAGCA
GTCATGGCAATTGCTGAAGCAGTGGTGTGGTGAGGACATGAGTTGAGCCT
CTCCTTGTCGTCCTGGGTTCCACCTTCAGAAGAGAAAGGTGAATGCAGAG
AATAGGCATAGATTTCAGTAGGCTGTGCTTTTCCAAGACCTCTCCTGGCC
TTTGTGTGTAATTTTCTTCCACAGCACTGGTCACACAAGCACCCATCTGA
GCTCTCTAGGATGCCCAGCCTTTATCCAAACTGTTCCCCCGCCAGAAAAC
TGTCTCCTCCCTTGGAGGAAATGGGGGGATGGAGCTGGCTGCTCAAGCTC
TTGTTTTGGAAATAGGTTCCCTAAAACCCTGGGTGGCCTGGGAGCCCCTG
AAAAAAAAATCCTTTATCTTTTTTTAAATCTGGAGTGAAAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_h19.b1 MSMg01no358_h19.b1 CHROMAT_FILE:
MSMg01no358_h19.b1 PHD_FILE: MSMg01no358_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:46 2005
         (488 letters)



>mm_chr7_91795962_91796849
          Length = 888

 Score =  913 bits (472), Expect = 0.0
 Identities = 481/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgttttcttatcattttactgcaaactccttggcatggttaataagcttttc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattccctgtttccttatcattttactgcaaactccttggcatggttaataagcttttc 629

                                                                       
Query: 65  acagtgttaccttagtctgtttctaaggttgtttccagtgtttgatattccaagtgcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acagtgttaccttagtctgtttctaaggttgtttccagtgtttgatattccaagtgcata 569

                                                                       
Query: 125 gaattcttgcccaggaagaatgcagttgtgcatctgttagctgtggacacattgagcata 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaattctttcccaggaagaatgcagttgtgcatctgttagctgtggacacattgagcata 509

                                                                       
Query: 185 tactagtgaaaactgagacagcaatggaattgctaggcaatataacctatggaactaccg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tactagtgaaaactgagacagcaatggaattgctaggcaatataacctatggaactaccg 449

                                                                       
Query: 245 gccatttattgaagtgctgttgtgtggagtttgtacttgtttttatccttctgcaatgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gccatttattgaagtgctgttgtgtggagtttgtacttgtttttatccttctgcaatgac 389

                                                                       
Query: 305 aaatgctcactataaacaattagaaagtttgtattagcaaaataactgacacattatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaatgctcactataaacaattagaaagtttgtattagcaaaataactgacacattatttt 329

                                                                       
Query: 365 atgagcttgagttataaaccattccctgatactgctggctgagagagagagtggtatcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atgagcttgagttataaaccattccctgatactgctggctgagagagagagtggtatcat 269

                                                                       
Query: 425 ctcaggtagaggtgaggcattttcaactaattcctaacaagtgatctattatgtggtaag 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 268 ctcaggtagaggtgaggcattttcaactaattcctaacaagtgatctattgtgtggtaag 209

               
Query: 485 cagg 488
           ||||
Sbjct: 208 cagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_h19.g1 MSMg01no358_h19.g1 CHROMAT_FILE:
MSMg01no358_h19.g1 PHD_FILE: MSMg01no358_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:46 2005
         (496 letters)



>mm_chr7_91592675_91593570
          Length = 896

 Score =  928 bits (480), Expect = 0.0
 Identities = 492/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggatgttacagtggtgagcagacctctccctcccctatataaattcctcatccaatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatgttacagtggtgagcagacctctccctcccctatataaattcctcatccaatctc 260

                                                                       
Query: 61  ttcattgctagtggatttggtcggtccaaattctggttttccaaaggaccctgttcttaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattgctagtggatttggttggtccaaattctggttttccaaaggaccctgttcttaa 320

                                                                       
Query: 121 tctctgctttaggtggtagcatagcttctgtgagactctgctttcattgactgtctggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgctttaggtggtagcatagcttctgtgagactctgctttcattgactgtctggaa 380

                                                                       
Query: 181 attgtcactagctctgtactgtcctgtaaattccatggagttttgtgacatcattgctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtcactagctctgtactgtcctgtaaattccatggagttttgtgacatcattgctga 440

                                                                       
Query: 241 caacctagttccagggcatagcagtatctcaacctggctacaaagcagtcatggcaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacctagttccagggcatagcagtatctcaacctggctacaaagcagtcatggcaattg 500

                                                                       
Query: 301 ctgaagcagtggtgtggtgaggacatgagttgagcctctccttgtcgtcctgggttccac 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ctgaagcagtggtgtggtgaggacatgagttgagcctctccttgtcctcctgggttccac 560

                                                                       
Query: 361 cttcagaagagaaaggtgaatgcagagaataggcatagatttcagtaggctgtgcttttc 420
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cttcagaagagaaagatgaatgcagagaataggcatagatttcagtaggctgtgtttttc 620

                                                                       
Query: 421 caagacctctcctggcctttgtgtgtaattttcttccacagcactggtcacacaagcacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagacctctcctggcctttgtgtgtaattttcttccacagcactggtcacacaagcacc 680

                           
Query: 481 catctgagctctctag 496
           ||||||||||||||||
Sbjct: 681 catctgagctctctag 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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