BAC Information

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BAC

Clone NameMSMg01-358O15
Chromosome7 (Build37)
Map Location 133,472,510 - 133,472,954
singlet/doubletsinglet
Overlap genenone
Upstream gene4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495
Downstream geneLat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358O15.T7 (MSMg01no358_o15.b1)MSMg01-358O15.TJ (MSMg01no358_o15.g1)
ACCAG468456AG468457
length693710
length of high quality
(start - end)
240 (72 - 311)509 (69 - 577)
definitionCHROMAT_FILE: MSMg01no358_o15.b1 PHD_FILE: MSMg01no358_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:18 2005CHROMAT_FILE: MSMg01no358_o15.g1 PHD_FILE: MSMg01no358_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAAAGGGCGGAATTCAC
CTGCTTTACTACAAACCTGCCAGGAACAGTGGGAGGACATGGATTATCCA
CAGCCCTTGTTCCTTCCCTTATTTCCACTGCAGGATCTTAGATGTGTAGC
CCAGCCTCTGCCTCCTTCAGCAAATCCTACTGGCATGCACCACTACAACC
AGCACCACTGCAGGATCTTACGCACAGTAAAACACATTTCGACACTGGTG
GTGCACGCCTTTAATACCAACATTTGGAAAGCAGAGGCCAGTTGATCTTT
GACTTTGAGGTCTGCTCTTTCTGCAGAGTGAGTTCCACGACAGCCAGGGC
TACACAGAAAGACTGTGTCCCGAAAAACAAACAAGATAGATTTAGGGACT
AGAGATTCCTCACCGGCTAGGAGTGTGTATTGCTTTTCTAGAGGACTTGA
GTTTGGTTCTTAGCACTTACATCAAGTGGTTCACAACTGCCTGTAAAACC
AGCTCCAGTGAGACCTAGTGCCTCTGAACTTCACCTGCCATTTCCACCCA
TATACACAGAGTTAAAAGTAAACATTTTTAATAGCTTATTTATGTGTATG
AGTGCTTTGCTTATGCGTGTGTAAGGGCACTGTGTTTTGTGCTTGATTCC
CATTGAGGCTACAATAGGGTGTTGAATCTCCTGGTAGTACAGG
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTAGTTTTTAATATCATTAATATTAGATTG
CCAAAAGATATTCCATGAGACTGTTGTAGAATTAAGAGTTAAAAGATTCC
TATTGCACCAGATAGTTCTGTGCAGAGTTGGGGAGATGGATTCGCTGATC
ATTTACTGTGTCTTTCATGCAAGAGTCTTTACTGTAGTCATGGCAGTCAT
TCCCACAGCACTAAGTGGGTAGGGTTTGTGACTTGGTATCTGTCTTAGTT
AGGGTTTTACTGCTGTGTATCAGACATCATGACCAAGTACGTTGTCTTAT
AAAGTACAACGTACATTTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCC
ATTATCATCAGGATGCCCGATTGGCAGCATCTAAGCAAGTACAGTGTAGG
AGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGTAGAAGACTG
ACTTCTAAGAAGCTAAGGTGAGAGTCTTAAGCCCACTCCCACAGTGTCAT
ACCTACTCCAGCAAGACCACACCTTCTAGTAGTGCCACTTTCTGGGTCAA
GCATTTTTAAACCATCACAGTATCTAACCTCAGGAATTCCTGTTATTAAG
AATGTCCACCTTAGCCGGTGTGGTGTTGGCGCATGCCTTTTAATCCACCC
CTTGGGAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_o15.g1 MSMg01no358_o15.g1 CHROMAT_FILE:
MSMg01no358_o15.g1 PHD_FILE: MSMg01no358_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:18 2005
         (509 letters)



>mm_chr7_133472245_133473155
          Length = 911

 Score =  774 bits (400), Expect = 0.0
 Identities = 434/446 (97%), Gaps = 3/446 (0%)
 Strand = Plus / Plus

                                                                       
Query: 66  aagagttaaaagattcctattgcaccagatagttctgtgcagagttggggagatggattc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagagttaaaagattcctattgcaccagatagttctgtgcagagttggggagatggattc 325

                                                                       
Query: 126 gctgatcatttactgtgtctttcatgcaagagtctttactgtagtcatggcagtcattcc 185
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 326 gctgataatttactgtgtctttcatgcaagagtctttactgtagtcatggcggtcattcc 385

                                                                       
Query: 186 cacagcactaagtgggtaggg--tttgtgacttggtatctgtcttagttagggttttact 243
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacagcactaagtgggtagggtttttgtgacttggtatctgtcttagttagggttttact 445

                                                                       
Query: 244 gctgtgtatcagacatcatgaccaagtacgttgtcttataaagtacaacgtacatttggg 303
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctgtg-aacagacatcatgaccaagtacgttgtcttataaagtacaacgtacatttggg 504

                                                                       
Query: 304 gctggcttacaggttcagaggttcagtccattatcatcaggatgcccgattggcagcatc 363
            |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 505 actggcttacaggttcagaggttcagtccattatcatcaggatgggagattggcagcatc 564

                                                                       
Query: 364 taagcaagtacagtgtaggaggagctgagagttctacatcttcatctgaaggctgctagt 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taagcaggtacagtgtaggaggagctgagagttctacatcttcatctgaaggctgctagt 624

                                                                       
Query: 424 agaagactgacttctaagaagctaaggtgagagtcttaagcccactcccacagtgtcata 483
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 agaagactgacttctaagaagctaaggtgagagtcttaagcccacacccacagtgtcata 684

                                     
Query: 484 cctactccagcaagaccacaccttct 509
           ||||||||||||||||||||||||||
Sbjct: 685 cctactccagcaagaccacaccttct 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 911
Length adjustment: 10
Effective length of query: 499
Effective length of database: 901
Effective search space:   449599
Effective search space used:   449599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)