BAC Information

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BAC

Clone NameMSMg01-359O01
Chromosome7 (Build37)
Map Location 35,594,154 - 35,772,044
singlet/doubletdoublet
Overlap geneChst8, Pepd
Upstream geneLOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15
Downstream geneCebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359O01.T7 (MSMg01no359_o01.b1)MSMg01-359O01.TJ (MSMg01no359_o01.g1)
ACCAG469187AG469188
length727746
length of high quality
(start - end)
511 (56 - 566)332 (67 - 398)
definitionCHROMAT_FILE: MSMg01no359_o01.b1 PHD_FILE: MSMg01no359_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:28 2005CHROMAT_FILE: MSMg01no359_o01.g1 PHD_FILE: MSMg01no359_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,594,154 - 35,594,664)(35,771,713 - 35,772,044)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAACTTC
TCTCGATCAAGTCCCAGCGAGTCTGTCTACAAGCCGAGATCACAAATGAC
AGGTAGTTTCGCAGAGGGCAAAAGTCACAACGTCTTTACACTACCGATTT
GTAAGTCACATCCTCTGCCACAGTGATTTACTGACCAGAGGGTCACTTAC
CCTTCAGCCAATAAGAAATGAGCTGACGTCTCCAGTATCATCTGCCACCT
GAGCTCAGGCAGCTGTCCCCAGGTTACCTGAGCCAGTGAGTCTCCTCTAT
TTGGGGGCAGCTTTTTCCTTGGGAGGAAAAGACACAGCTGCTCTCAAGCC
AGACACGTCTGGAAATCGGCTCCAAGGGCAAAGCACCCAGGATCCTCTGG
TCACCACCGTGTCCCAGGGAAGCTGCCCACCTCCAGCAAGCATCCTGACA
CTGAGGCCACATATGCACACAGGCAACACCTTTACTCATCTGTTTTATTT
TTGGCCATTCCCTCTGCAGAGCCTTCCTGACCTCCTCCGGCCAGCATTAT
ATAAACCTCCTTTTAGAAGACTCATTTCCTTCTGAAAAATACAGACGCTG
GGCAATGGGTCCCCACGTTTACTGACTACAATTTGCTCTGCTGTATTGGG
CATTCCGAGAGGCGATAATACCTGTTTCCTGAAATGCGTTTCGGAATCCA
GCCGGATAGTTATTCCCAAGCTTCATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXGGGAGGGGAAAAACTCCCAGCCCAGAATAATTGC
TCCCAGAGGGAGCGTCGTTTTGCACTGGCATGTACAAGGTCTGGATGAGA
ATTCTCTAAAATCGGCAAGGAAGCTGGCGGCTAATCATAACTGTTTGCCT
GTGCCAGGAGCCAAACTGACATCACCACCCCTCTGGGACAATCTTCCTTA
GACCCCACACGGTCCCACAATGGCTCCTGACACCAAGGAGGGAGAACCAA
GCCACTCTGAGACAGGCTTGGGATCTACCAGGGGACTCCTTTGGAAGTGT
GTTAGGAAGGGTGGGGGCTCCTGGGGTGGGAGCAGGGCTTACTCAGAGGC
CCAGAGGGCCCTGGCAGGATCAGAGCCCTCCACTTCATTTATGTACAACA
CACAAAGCCTCTTATTTTCCAACCATAGCACTTCCCTTTTCTTTTTTAAC
AAATGTGACCCTTCTATACTCCCCCTTTTACATCCTTGTTCTCGATAGAG
AAATCGCCCCCGAAAAATCTTCTTCTACCATAACAATTCCTCCCCTTTTT
TTGTTCTATTTCCCCCCCCTTCCCATATTCCGACCCCCTTTCTTCCTCAC
TTGTTTCTTTTACTTACCCCTCACATGCCCTATCCTTTTTCTTCCATTCC
TCCCCATCCCCCCTTTTCCCTCCCCCTTCCGCCTTTCCCCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_o01.b1 MSMg01no359_o01.b1 CHROMAT_FILE:
MSMg01no359_o01.b1 PHD_FILE: MSMg01no359_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:28 2005
         (511 letters)



>mm_chr7_35593954_35594864
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaagtcccagcgagtctgtctacaagccgagatcacaaatgacaggtagtttcgcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaagtcccagcgagtctgtctacaagccgagatcacaaatgacaggtagtttcgcaga 260

                                                                       
Query: 61  gggcaaaagtcacaacgtctttacactaccgatttgtaagtcacatcctctgccacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcaaaagtcacaacgtctttacactaccgatttgtaagtcacatcctctgccacagtg 320

                                                                       
Query: 121 atttactgaccagagggtcacttacccttcagccaataagaaatgagctgacgtctccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttactgaccagagggtcacttacccttcagccaataagaaatgagctgacgtctccag 380

                                                                       
Query: 181 tatcatctgccacctgagctcaggcagctgtccccaggttacctgagccagtgagtctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcatctgccacctgagctcaggcagctgtccccaggttacctgagccagtgagtctcc 440

                                                                       
Query: 241 tctatttgggggcagctttttccttgggaggaaaagacacagctgctctcaagccagaca 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tctatttgggggcagctttttccttgggaggaaaagacgcagctgctctcaagccagaca 500

                                                                       
Query: 301 cgtctggaaatcggctccaagggcaaagcacccaggatcctctggtcaccaccgtgtccc 360
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtctagaaatgggctccaagggcaaagcacccaggatcctctggtcaccaccgtgtccc 560

                                                                       
Query: 361 agggaagctgcccacctccagcaagcatcctgacactgaggccacatatgcacacaggca 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 agggaagctgcccacctccagcaagcgtcctgacactgaggccacatatgcacacaggca 620

                                                                       
Query: 421 acacctttactcatctgttttatttttggccattccctctgcagagccttcctgacctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacctttactcatctgttttatttttggccattccctctgcagagccttcctgacctcc 680

                                          
Query: 481 tccggccagcattatataaacctccttttag 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 tccggccagcattatataaacctccttttag 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no359_o01.g1 MSMg01no359_o01.g1 CHROMAT_FILE:
MSMg01no359_o01.g1 PHD_FILE: MSMg01no359_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:28 2005
         (332 letters)



>mm_chr7_35771513_35772244
          Length = 732

 Score =  627 bits (324), Expect = 0.0
 Identities = 330/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggaggggaaaaactcccagcccagaataattgctcccagagggagcgtcgttttgcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gggaggggaaaaactcccagcccagaataattgctcccagagggagcgtcgttttgcact 473

                                                                       
Query: 61  ggcatgtacaaggtctggatgagaattctctaaaatcggcaaggaagctggcggctaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggcatgtacaaggtctggatgagaattctctaaaatcggcaaggaagctggcggctaatc 413

                                                                       
Query: 121 ataactgtttgcctgtgccaggagccaaactgacatcaccacccctctgggacaatcttc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ataactgtctgcctgtgccaggagccaaactgacatcaccacccctctgggacaatcttc 353

                                                                       
Query: 181 cttagaccccacacggtcccacaatggctcctgacaccaaggagggagaaccaagccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttagaccccacacggtcccacaatggctcctgacaccaaggagggagaaccaagccact 293

                                                                       
Query: 241 ctgagacaggcttgggatctaccaggggactcctttggaagtgtgttaggaagggtgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 292 ctgagacaggcttgggatctaccaggggactcctttggaagtgtgttaggaagagtgggg 233

                                           
Query: 301 gctcctggggtgggagcagggcttactcagag 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 gctcctggggtgggagcagggcttactcagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)