BAC Information

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BAC

Clone NameMSMg01-360B13
Chromosome7 (Build37)
Map Location 145,484,629 - 145,653,013
singlet/doubletdoublet
Overlap geneTcerg1l
Upstream geneEbf3, 9430038I01Rik, Txnl2, LOC435235
Downstream geneLOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360B13.T7 (MSMg01no360_b13.b1)MSMg01-360B13.TJ (MSMg01no360_b13.g1)
ACCAG469354AG469355
length764814
length of high quality
(start - end)		516 (69 - 584)131 (74 - 204)
definitionCHROMAT_FILE: MSMg01no360_b13.b1 PHD_FILE: MSMg01no360_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:45 2005CHROMAT_FILE: MSMg01no360_b13.g1 PHD_FILE: MSMg01no360_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,484,629 - 145,485,142)(145,652,883 - 145,653,013)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACCACCTTTCCAAAGCCACAGTCATGTAGAGGTCTCAGCAGTAAAT
GGCAGACAGGGGTGCACCACTTTGAAATGAGAACGGGCTGCCACAGCTTT
CACAGCAAGGGACAGTTGTCACCCATTCTGAGGTGTGAATGGGCAGCCAT
GCCAGCAGCAGAAATAAGGATAGCTGTAGGAGACAGATCAACAGGGTTAC
TGGCCATCATATAAGAGGGAAGAAATCAGGCCTGTTCAGAGCCTGCATAT
TATCCTCTAAGAGTCTAGAGAGGTCGTTCTTCTAACAGTCAAGAGTGCAA
TGTTAGCACCAAGGAACACGGGGACCATAGGTTCTCAGCTACTTTTTGGA
TGTGTGCACTGGGATATTCACATATACTTGTATTTACATCTTCCAAGGTC
CCAGCTAATCTAGAATGAAGAGATTGGTCCTACTTCAAGTCTGACATCTG
TATTCTGTTATTCTAAACCTCACAATGCATGCCACTGTCTCAGCAGGAAA
CATTCTGTCCGATGGCCCACTCCTAACTTCGATGAGCTGGCCTCACTTAA
AACTGAGTCCCTGCCTTGAGGTCAGAGGAGCATTANCAAAGACATCCCCT
GCCATTTCGGGCTAAACATCATCTTTTCCTGCGTCCATCATGGGAAAACC
AAAACTTAAGAAATTTGCTGGCTCTTGGAAAAAAGAACTTCCTGGGTCCT
TCTTGGTGGAATTT

NCCATGCTNTNNNAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGTTGCTAGTGAGAAAATTTATGTG
GGACTTGGAGCAGGAGAGTCCTGCAGGGTTTCTGGCTTTGTCATGCACCC
AGGTGGCCCTCGCTTATCTCCAGATTGCTAGGACCCACTCTCCAAGCTTT
TGCACGCCAGCCTTTTCCTGATCAGTANTCTAAAGCACACAGGTAGGTGT
TTTGTCTCACTACGAGCAAACGCGGNNCNNNNNNNCTNNAANNNCCTAAT
ACGAGCAGAAAAAAGNNNNNNNNNNNNNNNNAAGGNNNNNNNNNNNNNNN
NNNNNNNTNTTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTNNNNNNNNNTNNNNNNNTTNNNNNNNTTTNNNNTTTTTNTTTT
TTTTNNNTTTTTTTTNTNNNTTNNNTTTTNTTTTTTNNTTTTTTTTNTTT
TNNNNNNTNNNNNNNTNTTTNNTNTTTTTTNNTTTTTTTTTTTNTTTTTA
TAAAATAGAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_b13.b1 MSMg01no360_b13.b1 CHROMAT_FILE:
MSMg01no360_b13.b1 PHD_FILE: MSMg01no360_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:45 2005
         (516 letters)



>mm_chr7_145484429_145485344
          Length = 916

 Score =  978 bits (506), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccacagtcatgtagaggtctcagcagtaaatggcagacaggggtgcaccactttgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccacagtcatgtagaggtctcagcagtaaatggcagacaggggtgcaccactttgaaat 260

                                                                       
Query: 61  gagaacgggctgccacagctttcacagcaagggacagttgtcacccattctgaggtgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaacgggctgccacagctttcacagcaagggacagttgtcacccattctgaggtgtga 320

                                                                       
Query: 121 atgggcagccatgccagcagcagaaataaggatagctgtaggagacagatcaacagggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggcagccatgccagcagcagaaataaggatagctgtaggagacagatcaacagggtt 380

                                                                       
Query: 181 actggccatcatataagagggaagaaatcaggcctgttcagagcctgcatattatcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggccatcatataagagggaagaaatcaggcctgttcagagcctgcatattatcctct 440

                                                                       
Query: 241 aagagtctagagaggtcgttcttctaacagtcaagagtgcaatgttagcaccaaggaaca 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagtctagagaggccgttcttctaacagtcaagagtgcaatgttagcaccaaggaaca 500

                                                                       
Query: 301 cggggaccataggttctcagctactttttggatgtgtgcactgggatattcacatatact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cggggaccataggttctcagctactttttggatgtgtgcactgggatattcacatatact 560

                                                                       
Query: 361 tgtatttacatcttccaaggtcccagctaatctagaatgaagagattggtcctacttcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtatttacatcttccaaggtcccagctaatctagaatgaagagattggtcctacttcaa 620

                                                                       
Query: 421 gtctgacatctgtattctgttattctaaacctcacaatgcatgccactgtctcagcagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 gtctgacatctgtattctgttattctaaacctcacaatgcatgccactggctcagcagga 680

                                             
Query: 481 aacattctgtccgatggcccactcctaacttcga 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 aacattctgtccgatggcccactcctaacttcga 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_b13.g1 MSMg01no360_b13.g1 CHROMAT_FILE:
MSMg01no360_b13.g1 PHD_FILE: MSMg01no360_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:45 2005
         (131 letters)



>mm_chr7_145652683_145653213
          Length = 531

 Score =  230 bits (119), Expect = 2e-65
 Identities = 128/131 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagttgctagtgagaaaatttatgtgggacttggagcaggagagtcctgcagggtttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atagttgctagtgagaaaatttatgtgggacttggagcaggagagtcctgcagggtttct 272

                                                                       
Query: 61  ggctttgtcatgcacccaggtggccctcgcttatctccagattgctaggacccactctcc 120
           ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 271 ggctttgtcatgtgcccaggtggccctcacttatctccagattgctaggacccactctcc 212

                      
Query: 121 aagcttttgca 131
           |||||||||||
Sbjct: 211 aagcttttgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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