BAC Information

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BAC

Clone NameMSMg01-360E17
Chromosome7 (Build37)
Map Location 57,270,760 - 57,418,222
singlet/doubletdoublet
Overlap geneNell1
Upstream gene9130015G15Rik, 5330421F07Rik, Dbx1, Htatip2, Prmt3, Slc6a5
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E17.T7 (MSMg01no360_e17.b1)MSMg01-360E17.TJ (MSMg01no360_e17.g1)
ACCAG469504AG469505
length750748
length of high quality
(start - end)		597 (45 - 641)449 (81 - 529)
definitionCHROMAT_FILE: MSMg01no360_e17.b1 PHD_FILE: MSMg01no360_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:00 2005CHROMAT_FILE: MSMg01no360_e17.g1 PHD_FILE: MSMg01no360_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,270,760 - 57,271,279)(57,417,862 - 57,418,222)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTCCTTTACGAAATAAACATATAGTTCGAAATAAGTAAACACATA
AGAGACTCTCAATACTACACCATTGAGATGAATAGCTATCAGTATTGTGC
TAGAGTCAAAGAAACCTCTTGTGCTTCAGAGATCTGAGTGTGAAGTCTAT
GGGAAAGCTTCAGTTAATGTGTGGACACTGACACTGCATGGCAATTTTAA
GTGTAAAATTTCCAAGGAGAGGCTTTTGTAACTGTATCATCTCCTAGAGA
CACAACAGAGCACCTATGCAATCGTTCAGAAATGTGATCTTGAGAGCGTT
TCTGTTTTTCAGATGGGAAAGTCAAGACTCAGTGGCCATATCAATACTTG
AGCTCAAACCTTTTTGTCTTCTAACTCTAGGCTTGACCTGACTTGCTATG
AGACAGGGTTATTGCACTAGGAAGGGGAAACTGAGGCTCGTAGTGGTTAG
TCTATTTCTCTAGCTTTCATTTGTGTACAGAAATGGCATGTCACTTGTGG
GGCATTGGGCTATGCACAGACAGGCTAGTCTCCAGTCGAGCTGAGGTCTG
AACCCCGGAATGGTGATAATTCACTTACATGACATGACACAGTAAGCATT
CCTTCCTGCTCCTGGAACTTTGGCTCCTGCCTAAGTTAATGCCCCTCACA
GCCCCCACAAGAAAGCATGGCTAGAAGTCAGTAAGCCATGCCCCAAGTTN


GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACAGTGGCTTTTTCCCC
AGTTATTTTTGCACTTGGCAGTACTAGAATGTTATTCTGAGTAGTTTCTA
TATACAGCCCTCTCCCTCTGACTGTACAGTGGATAAACAGACTTATTCCT
TCTGCCTCATGCATAGATCAATCATTCATCATCCAAATGTTTGGAACTGA
ATGGTATTGTGTGAATTTTAAAAAGTCAGACACAGGAAAGACAAATGCCA
CATGTTTATTCTCACGTGGAAGCTAAAAATAAAATGTCAAAATAGAAGAG
ACTAAAGGAGTCACTACTAGATACTCAGAAGGGGAGCCAGAGAACAGGAA
TCAGGGATTTGGAGAACGGATACAAAAACACAAAAGAAAAAGGTTCCAAT
GTCCCTATATATCACTATAGTTCACAAAACCCTGTCATATATTATAGGAA
GAATAATGGCCACCTCTACATAAATGCTGGGGGCCTATACAACCACAAAG
GCATCTCCTGAAGAAGAACTANTTGAGGACTGCCTAAGAGACCAGGATTG
TTGATGCAGACAAGCCGGCCCATCGGGAATATTGGTTAGAAAAAAGCTTT
CTTGGGGCCATGGGGAAGGGGTGGGAGTTTTCTTCAAATTTCTCCTCTCG
TCCCATACTTTGCGTCCTGTTTCTCCTTCCCCTACCTCTGTTCTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e17.b1 MSMg01no360_e17.b1 CHROMAT_FILE:
MSMg01no360_e17.b1 PHD_FILE: MSMg01no360_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:00 2005
         (597 letters)



>mm_chr7_57270556_57271552
          Length = 997

 Score =  959 bits (496), Expect = 0.0
 Identities = 514/520 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtcctttacgaaataaacatatagttcgaaataagtaaacacataagagactc 64
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctgtcctttaggaaataaacatatagttcaaaataagtaaacacataagagactc 264

                                                                       
Query: 65  tcaatactacaccattgagatgaatagctatcagtattgtgctagagtcaaagaaacctc 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaatgctacaccattgagatgaatagctatcagtattgtgctagagtcaaagaaacctc 324

                                                                       
Query: 125 ttgtgcttcagagatctgagtgtgaagtctatgggaaagcttcagttaatgtgtggacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtgcttcagagatctgagtgtgaagtctatgggaaagcttcagttaatgtgtggacac 384

                                                                       
Query: 185 tgacactgcatggcaattttaagtgtaaaatttccaaggagaggcttttgtaactgtatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgacactgcatggcaattttaagtgtaaaatttccaaggagaggcttttgtaactgtatc 444

                                                                       
Query: 245 atctcctagagacacaacagagcacctatgcaatcgttcagaaatgtgatcttgagagcg 304
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 445 atctcctagagacacaacagagcacctatgcaatcgttcagaaatgggatcttgagagtg 504

                                                                       
Query: 305 tttctgtttttcagatgggaaagtcaagactcagtggccatatcaatacttgagctcaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttctgtttttcagatgggaaagtcaagactcagtggccatatcaatacttgagctcaaa 564

                                                                       
Query: 365 cctttttgtcttctaactctaggcttgacctgacttgctatgagacagggttattgcact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctttttgtcttctaactctaggcttgacctgacttgctatgagacagggttattgcact 624

                                                                       
Query: 425 aggaaggggaaactgaggctcgtagtggttagtctatttctctagctttcatttgtgtac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggaaggggaaactgaggctcgtagtggttagtctatttctctagctttcatttgtgtac 684

                                                   
Query: 485 agaaatggcatgtcacttgtggggcattgggctatgcaca 524
           ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 agaaatggcatgtcacttgtggggcgttgggctatgcaca 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_e17.g1 MSMg01no360_e17.g1 CHROMAT_FILE:
MSMg01no360_e17.g1 PHD_FILE: MSMg01no360_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:00 2005
         (449 letters)



>mm_chr7_57417862_57418710
          Length = 849

 Score =  683 bits (353), Expect = 0.0
 Identities = 359/361 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacagtggctttttccccagttatttttgcacttggcagtactagaatgttattctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaacagtggctttttccccagttatttttgcacttggcagtactagaatgttattctga 302

                                                                       
Query: 61  gtagtttctatatacagccctctccctctgactgtacagtggataaacagacttattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtagtttctatatacagccctctccctctgactgtacagtggataaacagacttattcct 242

                                                                       
Query: 121 tctgcctcatgcatagatcaatcattcatcatccaaatgtttggaactgaatggtattgt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctgcctcgtgcatagatcaatcattcatcatccaaatgtttggaactgaatggtattgt 182

                                                                       
Query: 181 gtgaattttaaaaagtcagacacaggaaagacaaatgccacatgtttattctcacgtgga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 181 gtgaattttaaaaagtcagacacaggaaagacaaatgccacatgtttattcttacgtgga 122

                                                                       
Query: 241 agctaaaaataaaatgtcaaaatagaagagactaaaggagtcactactagatactcagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctaaaaataaaatgtcaaaatagaagagactaaaggagtcactactagatactcagaa 62

                                                                       
Query: 301 ggggagccagagaacaggaatcagggatttggagaacggatacaaaaacacaaaagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggggagccagagaacaggaatcagggatttggagaacggatacaaaaacacaaaagaaaa 2

            
Query: 361 a 361
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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