Query= MSMg01no360_g14.b1 MSMg01no360_g14.b1 CHROMAT_FILE:
MSMg01no360_g14.b1 PHD_FILE: MSMg01no360_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:09 2005
(475 letters)
>mm_chr7_146370208_146371077
Length = 870
Score = 857 bits (443), Expect = 0.0
Identities = 466/475 (98%), Gaps = 5/475 (1%)
Strand = Plus / Plus
Query: 1 taaaactgggccagggagatgagtcagcaggtaaaggcactgactgccaagcctgacagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaactgggccagggagatgagtcagcaggtaaaggcactgactgccaagcctgacagc 260
Query: 61 ctgagtttaatccctggaagtcacatgtcagaaaggaaccgacactctcaagttgttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagtttaatccctggaagtcacatgtcagaaaggaaccgacactctcaagttgttttc 320
Query: 121 agacttccacatgtgtgccacaatctgacagccccaagtctgctgtctctcactctccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacttccacatgtgtgccacaatctgacagccccaagtctgctgtctctcactctccat 380
Query: 181 ttccatccaagtgagccagtcctggacacctgttgtgacatagctatgacattcctcgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccatccaagtgagccagtcctggacacctgttgtgacatagctatgacattcctcgaa 440
Query: 241 attcatcctattgtgacagggccagagatgtgcacgcagacactcacagccatgtagttt 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcatcctaaggtgacagggccagagatgtgcacgcagacactcacagccatgtagttt 500
Query: 301 atatttcaaaaaaaatgtccaccagttggaaattaagtaaacagggcaacgacagctaca 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatttcaaaaaaa-tgtccaccagttggaaattaagtaaacagggcaacgacagctaca 559
Query: 361 cagaggaaagaagagctggttgttcctcagagtcacgcacggggatgtagacaagagatg 420
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 560 cagaggaaagaagagctggttgttcctcagagtcac--a--gggatgtagacaagagatg 615
Query: 421 cctaaccccacccagggccaatccacccccacaagctgaacctcagctttttcca 475
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 616 cctaacctcacccagggccaatccacctccacaagctgaacctcagctttttcca 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 870
Length adjustment: 10
Effective length of query: 465
Effective length of database: 860
Effective search space: 399900
Effective search space used: 399900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_g14.g1 MSMg01no360_g14.g1 CHROMAT_FILE:
MSMg01no360_g14.g1 PHD_FILE: MSMg01no360_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:09 2005
(402 letters)
>mm_chr7_146572687_146573487
Length = 801
Score = 725 bits (375), Expect = 0.0
Identities = 395/405 (97%), Gaps = 7/405 (1%)
Strand = Plus / Minus
Query: 1 agagatgcgacaaagaaaaggattaagaggaagtagtattacagagagaagcccacactc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 601 agagatgcgacaaagaaaaggattaagagaaagtagtattacagagagaagcccacactc 542
Query: 61 aaggagtgagtgtgtacaggcttctggagaaaaacctgtggccgtgcttttgaatgctct 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaggagtcagtgtgtacaggcttctggagaaaaacctgtggccgtgcttttgaatgctct 482
Query: 121 atcttatagacaagctttagaagaagagagggtattcaagagttaaagttagggaaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcttatagacaagctttagaagaagagagggtattcaagagttaaagttagggaaagac 422
Query: 181 attctaagactggattggcactttaccaaaataaggtttattctctcttctgcccttatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attctaagactggattggcactttaccaaaataaggtttattctctcttctgcccttatg 362
Query: 241 ggttt---gttttttgtcatgatgccaagatgcatgatgggagcaggcaaatttgcactg 297
||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtttaggg----ttgtcatgatgccaagatgcatgatgggagcaggcaaatttgcactg 306
Query: 298 ccaatgaggtggaaatgctgctataaagaagcaaagactggtgtccatcttcaccccact 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccaatgaggtggaaatgctgctataaagaagcaaagactggtgtccatcttcaccccact 246
Query: 358 ttgcacagacatagggtatgctcctactgcgctgctacactctgc 402
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 245 ttgcacagacatagggtatgctcctactgctctgctacactctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space: 311256
Effective search space used: 311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
