BAC Information

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BAC

Clone NameMSMg01-360H07
Chromosome7 (Build37)
Map Location 145,801,203 - 145,801,650
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435235, Tcerg1l, LOC100043290
Downstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360H07.T7 (MSMg01no360_h07.b1)MSMg01-360H07.TJ (MSMg01no360_h07.g1)
ACCAG469626AG469627
length753770
length of high quality
(start - end)
448 (70 - 517)443 (76 - 518)
definitionCHROMAT_FILE: MSMg01no360_h07.b1 PHD_FILE: MSMg01no360_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:12 2005CHROMAT_FILE: MSMg01no360_h07.g1 PHD_FILE: MSMg01no360_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCCCTAACATTACATCATTCAATTACTACAATACCTGTGCACATAAAT
GACTCTATAAACACACTGGTTTTACTATATTAGTTTCCGAGAGTTCTGCT
ATGATGCACCATAAACTGGGTGACTTACAACAACAAAAACTTAACTAAGT
CTGGGTTCTGTAGGCAGAATCTAAGCCTGTTCCTGCACAGGGCTACAGAG
AGGAGCCTTCCCGTATCTGCCACACCCCTGGCCCCTTTTCTTTGGTGAGC
AGCTATATTATTTCATTCTTTATCTCTGTATCCCCACAGTCATGCACATC
CCAGCTGTATGTGTGTGTATTTATGAGCACTCAATGACTATTATCCCATC
TTGACAGAGTACAGCTGCTATGAGCCTTGCCTGCAAGGGTGGAAAAGACC
CCCTGAAGCCTGATATTTGCTTACAGAGCTCTATGGCCTTCTTCTGTTCC
TGGCTTTTTTCCTCATGCACAGTCATAGGACAGGCATGGAGCAGAGATAA
ATGTTCCTTGTTTATATACATTGGGTTGTGAGCAGAGCCACATTCTGATA
GCCTGGGCTTGCACTGACATTTATTCCATGTGACATTGTAATTTCCTCCA
TGAAATCTTAGAGCCGTCTAAAATTCCTGGAAATACCCTGTTGGTTTTTT
TGTTGTGTATTTCTAGAACCCCCCCAAATTTTTCCCGCCTCTCATCCCTC
CAT
CGATGATCGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAAAATTGAAAGGCTTCTGACCA
GCAAAGGAAACAACCCACAGAGAGAAGAAACATCGTAGATACTGGGGAAA
ATGTTTTTCTGCTACTGAAAGGGGATTAATATCTGAAATATACCAAGAAC
CCAGAAAGTTAATGATCAAAGAAAAAGGAATCTAATCAACAAATGAGCAA
ATCATCTAAACAGACACTAACCAAAGGAAGAAATACAGATGGGACAACAG
AGATGCCTCAGAGACAGCCCAAGAAGTGCTTGGTGTGCAGACATGAGACC
TGAGTTCAAATGCCCAGAACCCACATACAACTGGATGAAGTTGTGCATAC
ATCTCTAGTACCAATGATCCTTTGTGGAGGTGGGAGGCAGAGAAGATTTT
GGGAGCTCTTGGGCTAGTTAGCCTGACATAAGCAGCAGAAAAAAAAGAGA
GAGCCTGTCTCATAAAAGATGGAATGTGAGGACAAACCCTGAGGCAGTCC
TCTGACTCTCACACCTGTGCTCACTTCTTATTAACACACACACTCTCACA
CTTTTCTTCACTTTTATACTCTTTTCCTCCCCTTTCTTTTGTTAAACAAA
ATAGCTTCCTAGGCTTTTTTTTTTTTTATACTTACCTATTTCCCTTTTCT
CCCTTTTGAGTAGGCGTTCAATATTTATTTTAATACCCTCTCTTCTTTCC
CCTTTTTGGTCACCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_h07.b1 MSMg01no360_h07.b1 CHROMAT_FILE:
MSMg01no360_h07.b1 PHD_FILE: MSMg01no360_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:12 2005
         (448 letters)



>mm_chr7_145801003_145801850
          Length = 848

 Score =  750 bits (388), Expect = 0.0
 Identities = 433/448 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaattactacaatacctgtgcacataaatgactctataaacacactggttttactata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaattactacaatacctgtgcacataaatgactctataaacacactggttttactata 260

                                                                       
Query: 61  ttagtttccgagagttctgctatgatgcaccataaactgggtgacttacaacaacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtttccgagagttctgctatgatgcaccataaactgggtgacttacaacaacaaaaa 320

                                                                       
Query: 121 cttaactaagtctgggttctgtaggcagaatctaagcctgttcctgcacagggctacaga 180
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 321 cttaactaagtctgggttctgtaggcagaatccaagcctgctcctgcacagggctacaga 380

                                                                       
Query: 181 gaggagccttcccgtatctgccacacccctggccccttttctttggtgagcagctatatt 240
           |||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct: 381 gaggagcctttccgtatccgccacacctctggccccttttctttggtgagcagctacatt 440

                                                                       
Query: 241 atttcattctttatctctgtatccccacagtcatgcacatcccagctgtatgtgtgtgta 300
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gcttcattctttatctctgtatccccacagtcacgcacatcccagctgtatgtgtgtgta 500

                                                                       
Query: 301 tttatgagcactcaatgactattatcccatcttgacagagtacagctgctatgagccttg 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttatgagcactcaatgactatgatcccatcttgacagagtacagctgctatgagccttg 560

                                                                       
Query: 361 cctgcaagggtggaaaagaccccctgaagcctgatatttgcttacagagctctatggcct 420
           ||| |||| |||||||||||| |||||||||  |||||||||||||||||||||||||||
Sbjct: 561 ccttcaagtgtggaaaagacctcctgaagcccaatatttgcttacagagctctatggcct 620

                                       
Query: 421 tcttctgttcctggcttttttcctcatg 448
           ||||||||||||||||||||||||||||
Sbjct: 621 tcttctgttcctggcttttttcctcatg 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)