BAC Information

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BAC

Clone NameMSMg01-360H10
Chromosome7 (Build37)
Map Location 85,002,650 - 85,003,031
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneA330068G13Rik, Ntrk3, Mrpl46, Mrps11, Det1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360H10.T7 (MSMg01no360_h10.b1)MSMg01-360H10.TJ (MSMg01no360_h10.g1)
ACCAG469632AG469633
length768765
length of high quality
(start - end)
420 (68 - 487)382 (73 - 454)
definitionCHROMAT_FILE: MSMg01no360_h10.b1 PHD_FILE: MSMg01no360_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:13 2005CHROMAT_FILE: MSMg01no360_h10.g1 PHD_FILE: MSMg01no360_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATGCCTTTACATAAACATAATAAAAGCAATTTACTGCAAACCAATG
TCCAATATAAAATTAAGTGGAGAGATACTTGAAGCAATCCCACTAAAAGC
GAAGACAAGACAAGGATGCCCACTCTCCCCATATCTATTCAATGTCATAC
TTGAAGTTCTAGCCAGAACAATAAGTCTAAAAAAAGAGATCAAGGGGATA
CAAATTGGCAAAGAAGAAATAAAGGTATCACTACTTGTAGATGATATGAT
AGTACACATAAGTGAACAAAAAATTCTACCAAAGAACTTATCCAGCTGAT
AAACAACTTCAGCAAAGTGGCCAGATACAAAATTAACTCAAAAAAATCAG
TAGCCTTACTTTATACAAATTATAAACAGGCTAAGAAAGAAATTAGGAAA
ACAATTCCCTTTATAATAGTCACAAATAATATAAAATATCTTGGCGGTAA
CTTACTAAAGAAGTGAAAGAACTGTTACACAATAACTTCAAGTTTCTCAA
GAAAAAAAAATTGAGATCTCAAAAAAAGGAGAGATCGCCTATGGTCGGGG
ATTGGTTGAATTAACATATTAAAAAATGGGCATCCTTACCAAAGCATCTC
CCGATTTTAGGAAACCCCCTTTTTTATCCTCTCCATTTTTCTTATAACTG
GAAAATTAACTTTTTATTTTTCTGTGTGGGGTTATCAAAAATATATACCT
CACTTCCATACACTTTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTGTTCTCTCTAACAACAAAAACGAG
ATGTGAAGTGTCAGCATTATTTGTGGTGACCCCTTAGAATGGAAAACTCT
TAAATGCAGCCTCCTCCTTAGCAAATGATCGTCATGGAATAGAAAGACGT
GTTCATCCCCGCCGACCTGTTGCTTTTTCTTGCCTGGCTTCATGTCTAGT
ACCCTCTGAAACAATATTAGAGGAATTGTCTGCTGCCCAGCAGCCAGAAA
TATATGCAGGAGCTCAGGATCTATGGGGATTTCTGTGCTCTGAACAAGCT
CAGTGAATCTGCATCTCTGGGAATAGACCATTAGGAGAAATTGGAATCTC
TCCTGATTAAGGCAGAGTGTTTGACCACTGGCAAAAAAAATGTACAAAGA
GGCCAGCAGTCAGTATCGTGTCATGAAGTGAATGGGGTCTGCACAGTATC
ACTCTGGTCTACCTACGAGGTAATTATATGGCTTCTAATTATTTTTCAGA
AACTGTCGTTGAATTTCCGTTATCTTCTCCTATACAAATAATTTAAAGCC
TTCCGGAAAATCTATATATTGAGCTTTTTTCCCCTTTTCCCGTTTTCCTT
TTCTTACCCCACATTACGATTGTTTCTTTCATATCCACATTTCTTCTTTA
ACCGTTCCTGTGCAATTTTTCCTTTTCGTTATCCCAATTTTATCATCCTT
TTACTTTCTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_h10.g1 MSMg01no360_h10.g1 CHROMAT_FILE:
MSMg01no360_h10.g1 PHD_FILE: MSMg01no360_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:13 2005
         (382 letters)



>mm_chr7_85002450_85003231
          Length = 782

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/382 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgttctctctaacaacaaaaacgagatgtgaagtgtcagcattatttgtggtgaccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgttgttctctctaacaacaaaaacgagatgtgaagtgtcagcattatttatggtgaccc 260

                                                                       
Query: 61  cttagaatggaaaactcttaaatgcagcctcctccttagcaaatgatcgtcatggaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagaatggaaaactcttaaatgcagcctcctccttagcaaatgatcgtcatggaatag 320

                                                                       
Query: 121 aaagacgtgttcatccccgccgacctgttgctttttcttgcctggcttcatgtctagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagacgtgttcatccccgccgacctgttgctttttcttgcctggcttcatgtctagtac 380

                                                                       
Query: 181 cctctgaaacaatattagaggaattgtctgctgcccagcagccagaaatatatgcaggag 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctgaatcaatattagaggaattgtctgctgcccagcagccagaaatatatgcaggag 440

                                                                       
Query: 241 ctcaggatctatggggatttctgtgctctgaacaagctcagtgaatctgcatctctggga 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaggagctatggggatttctgtgctctgaacaagctcagtgaatctgcatctctggga 500

                                                                       
Query: 301 atagaccattaggagaaattggaatctctcctgattaaggcagagtgtttgaccactggc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 501 atagaccgttaggagaaattggaatctctcctgattaaggcagagtgtttgaccattggt 560

                                 
Query: 361 aaaaaaaatgtacaaagaggcc 382
           ||||| |||||||| |||||||
Sbjct: 561 aaaaacaatgtacagagaggcc 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)