BAC Information

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BAC

Clone NameMSMg01-360K09
Chromosome7 (Build37)
Map Location 109,233,726 - 109,234,166
singlet/doubletsinglet
Overlap geneTrpc2
Upstream geneFchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121
Downstream geneArt5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360K09.T7 (MSMg01no360_k09.b1)MSMg01-360K09.TJ (MSMg01no360_k09.g1)
ACCAG469773AG469774
length751766
length of high quality
(start - end)		486 (70 - 555)440 (75 - 514)
definitionCHROMAT_FILE: MSMg01no360_k09.b1 PHD_FILE: MSMg01no360_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:27 2005CHROMAT_FILE: MSMg01no360_k09.g1 PHD_FILE: MSMg01no360_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTACCTTGCGGGGAATCTTGGGTTCCTTTCAGACATTCTTGTTT
TGTCTCTGTTGTAAAAGAGTTAGGGTGTTGGGTTCTGTACTCAGGGCCTC
ATGGTGGGCCTCATCAAAGATGGTAGGCGAGATTTTAAATCCTTGGGGCA
GATGGGTCCAAGTCAGCTGTCTGCTAATCCTAAGCTCTGGATCGTGCCAT
TCAAAGGCAAAGGTCTTGGGCGCCAAGGGTAAGCTGAAGAAAGCATTCTT
TAAATCCAGCATTGTATATTTTTGTTTACTCAGGAGGAAGAACACTCAAG
AGGGTGTAGGGATTAGGGACTGTTGGGTAGATATCCATTAAGCTGCTTGT
TTACCTCTCTTAAGTCTTGTACCAGTCTATAATCATTAGTTCCAGGCTTC
TTGATTGGCAGGAGGGGAGTGTTCAGGCTAATTGAGATAGTCTCAGGGTT
CCCGAATTTAATAGTCTCTTGATATGGGGGGTTATACCTTCCCTGGCCAT
CATGGGCATGGGGCACTGTTGGAACTGTACTGGCTCTACCCCCTGTTTGA
GCTCTATCCAAATTGGTGTCCGATGATTATCTTTACCAACTCTTCCTGTC
TCTGCTCCTTTTTTGGTGAAAGCGATCCAATCCAATGGTCACTTCCCCTT
TTGAGGTGGTTAGGTTTCAAAAAACCCCCTGTTCCCTGCCCCCCCCCATT
G

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTCCTGCCCACTCCACAAGCTGCT
ATGAGATGGGAAAAGTCCTTTGAGCACTGCTCTTTCCTGGTGGGGACCTT
TCTATTCTCTTGGCTCTCTGGCCCCAACTTGTCCTAGGCTTTCATGAGAC
CCTCATAGGTTCCCTACCTAATGACAGTCTTGAGGATGGAGACAGTCTGG
CTTGGCACAAAGGGAATGCCAAAGGCTCACTGATGGACAAACAGGAGTGG
TGCAATGCCAGGCCTAGACCAGGTACTCCATATATCTTTGGTCCATCCCA
GGTCCTCATACTTTTTTGGGGGTAGGGTTGTTGAGGTAAGGTCTCATGTA
TTCCAGGCTGGCCTAAAACTTACCAAAGATGCTCTTGAGCTCTCTACGAC
CCAGGTGCTGGGAATGCAGGTGTGATCCACCACACAGTGCGGGGATGAAA
GTCCAGCCCATGCACAGGTGCTCTGCCAACTGAGCTGTCTCCAGCCTCAT
TATGTACCATTCGCTAGGCCTTCAGCTCCCCTTAAACACCTCCGCTGCTC
ATCTTCTCTAACCAGTCCTTTCCCAGCCTAGTTTATAACCCTCCTTCCCC
AAAATTTTTTCCTAACACCAAATCCTTCGCTTGTTTTCTCTTTTTCTGTC
GTTCTTGGCTTGGATTCCCCGGGGAAAACCTCTTCTCAATGGCCTTTATA
TAACTTCTTGCTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_k09.g1 MSMg01no360_k09.g1 CHROMAT_FILE:
MSMg01no360_k09.g1 PHD_FILE: MSMg01no360_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:27 2005
         (440 letters)



>mm_chr7_109233664_109234503
          Length = 840

 Score =  808 bits (418), Expect = 0.0
 Identities = 436/442 (98%), Gaps = 3/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtcctgcccactccacaagctgctatgagatgggaaaagtcctttgagcactgctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgtcctgcccactccacaagctgctatgagatgggaaaagtcctttgagcactgctctt 444

                                                                       
Query: 61  tcctggtggggacctttctattctcttggctctctggccccaacttgtcctaggctttca 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 443 tcctggtggggacctttctattctcttggttctctggccccaacttgtcctaggctttca 384

                                                                       
Query: 121 tgagaccctcataggttccctacctaatgacagtcttgaggatggagacagtctggcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgagaccctcataggttccctacctaatgacagtcttgaggatggagacagtctggcttg 324

                                                                       
Query: 181 gcacaaagggaatgccaaaggctcactgatggacaaacaggagtggtgcaatgccaggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcacaaagggaatgccaaaggctcactgatggacaaacaggagtggtgcaatgccaggcc 264

                                                                       
Query: 241 tagaccaggtactccatatatctttggtccatcccaggtcctcatacttttttgggggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 tagaccaggtactccatatatctttggtccatcccaggtcctcatactttttttggggta 204

                                                                       
Query: 301 gggttgttgaggtaaggtctcatgtattccaggctggcctaaaacttaccaaagatgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gggttgttgaggtaaggtctcatgtattccaggctggcctaaaacttaccaaagatgctc 144

                                                                       
Query: 361 ttgagctctctacgacccaggtgctgggaat-gcaggtgtgatccaccacacagtgc-gg 418
           ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||
Sbjct: 143 ttgagctctctacgacccaggtgctggga-tcgcaggtgtgacccaccacacagtgctgg 85

                                 
Query: 419 ggatgaaagtccagcccatgca 440
           ||||||||||||||||||||||
Sbjct: 84  ggatgaaagtccagcccatgca 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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