BAC Information

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BAC

Clone NameMSMg01-360P01
Chromosome7 (Build37)
Map Location 122,865,025 - 122,865,272
singlet/doubletsinglet
Overlap geneSox6
Upstream geneCalcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360P01.T7 (MSMg01no360_p01.b1)MSMg01-360P01.TJ (MSMg01no360_p01.g1)
ACCAG469993AG469994
length783738
length of high quality
(start - end)
249 (76 - 324)73 (371 - 443)
definitionCHROMAT_FILE: MSMg01no360_p01.b1 PHD_FILE: MSMg01no360_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:49 2005CHROMAT_FILE: MSMg01no360_p01.g1 PHD_FILE: MSMg01no360_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCCCAAGTTTTCTCTCCTGTGCCGGTCATTTTCTCATATAAATGCG
GAACATTTGGTTATTTAAGGGGAAAAAACCCTGACAAAAACTTGAGGGTG
GAGAGTATTTGTGGGAAGCTTCCCTGAAGAGAAGCAACATCACAGTCACA
GTGGTTTTTGCTCTCCAGATTGTGCCTCCCTACCTGGGGTTCTTCCTGAT
CTCTCCTGCAGTGGCTGAGCATTCAGGATCCCTGGCACCTTTTACACATA
GTAACAAAACAACTGAAGTCTAATACTTATAAAAAGGCAAGCAATTTCAG
AAAGTCTACTACTGGTGTAGTTGTACATAACTATAATCTCAGCCCTAGGG
AGGTAGAGACAGGNCACCCCCCCCCTCCCAGGACAGTCTGGACTACATAG
GAGGAGTCTGGGTCACATCTAAAGCATGCAAAATGAAAGTATATTGAATA
CTGTTTGCTCACTCAGTGTATCTCTTGTAGGATTTGGGTCTCTATCTCTC
ACTCTTCTTTCTCTCTTTATTAGCATTTCCGCCTGAGTGTTTTATTTTTC
TTCTCACTCTGTCTTTGTGTAATTATTTATTGTCGTTGCTACCACACCTT
GATAATATGTTCTGCATTTAATTTTTACTCCAACTTCATGCTGCACACTA
ATTTTTAATGATTTCTCCTAAGCGCCCCCTCTCATTTTACCCTCCCTTAG
TTCTTCTTAACCGCACCTTACACACTTATCGTA
CGATGCAGTGNGTAGGCCGGGAGGACGCCTGGTTTCCGACCNGAGGGNAA
CNANAGAAGGTTACCNGACCGGCGGCGGNCNCNCNACAGNAGNNCCACAG
NCAAAAGCAAANAAATAAACCCCCCCNCACAACNCGGGGCCGGGCAAGCA
ACCGGACGCACAAAAGGAACGAGCGGNNCCAACAGGCANACACCCNCCAG
NCACCCCANNNCCACANCCCNCCAAGAGGCCAAGCGCCNCCCGGANGCCC
TTTTTATCTCATTCACACCCAGGACAGTCCAGCATGCCATGAACTGAAGA
GGCTTCCTAGAACCCGTCTTTTTTTTTACGCCNCNCCCAGGCNANGACNN
CNACCNCACGTCCTCTGCTGCTCCCTCTCCTATGACAGTCTGGCCACACT
AGTCTGTACACCCTCGCCCCTCCCTGTCTGGAGTGCCTTCCGTCCTGTTC
CTGTGGCTTCACCATGGCTTCCTTCAGGCCTCTCTCCTGAGTCTTAGGTC
CAGGCAGACACTACAGCCAGTGGATTCTCCACTTTAACTTTCTTCTTGGC
CCCCAACATGTATTCACTCTGTTTTAACTACTTGCTTGCCTCTACACGCG
TCACCCACCCCCGTTATAGCGCGCTCTGCCTTCCTCCCAGTCTTCTAGAC
TCTCTCTTTTTTTTTGCATTTCATCAGTTGGAATTGTCCGACATTAATTT
ATCTTCTCGTATACATCTTCCATTTTTGCCCTGCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_p01.b1 MSMg01no360_p01.b1 CHROMAT_FILE:
MSMg01no360_p01.b1 PHD_FILE: MSMg01no360_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:49 2005
         (249 letters)



>mm_chr7_122864825_122865473
          Length = 649

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccggtcattttctcatataaatgcggaacatttggttatttaaggggaaaaaaccctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccggtcattttctcatataaatgcggaacatttggttatttaaggggaaaaaaccctgac 389

                                                                       
Query: 61  aaaaacttgagggtggagagtatttgtgggaagcttccctgaagagaagcaacatcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaaacttgagggtggagagtatttgtgggaagcttccctgaagagaagcaacatcacag 329

                                                                       
Query: 121 tcacagtggtttttgctctccagattgtgcctccctacctggggttcttcctgatctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcacagtggtttttgctctccagattgtgcctccctacctggggttcttcctgatctctc 269

                                                                       
Query: 181 ctgcagtggctgagcattcaggatccctggcaccttttacacatagtaacaaaacaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctgcagtggctgagcattcaggatccctggcaccttttacacatagtaacaaaacaactg 209

                   
Query: 241 aagtctaa 248
           ||||||||
Sbjct: 208 aagtctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)