BAC Information

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BAC

Clone NameMSMg01-361G10
Chromosome7 (Build37)
Map Location 112,850,806 - 112,851,353
singlet/doubletsinglet
Overlap geneDnhd1
Upstream geneOlfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, LOC100042811
Downstream geneLOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361G10.T7 (MSMg01no361_g10.b1)MSMg01-361G10.TJ (MSMg01no361_g10.g1)
ACCAG470341AG470342
length754770
length of high quality
(start - end)		647 (47 - 693)541 (79 - 619)
definitionCHROMAT_FILE: MSMg01no361_g10.b1 PHD_FILE: MSMg01no361_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:26 2005CHROMAT_FILE: MSMg01no361_g10.g1 PHD_FILE: MSMg01no361_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGCACCTGATGCTTTGATAATTGGTAACCTCTAAGTAAGTTG
CTCTCTCTTTCCCACATTCCTAGAGTAAAGTGACATCTTCTCTCTCCTCC
CTAAGGTCCTACCTATTCATTGCCTGAAGGAAAAGAATACTACAATAATA
TTTGTAAGTTGAGATGGTTGAAAACTGGGTCAGATCACAATTAGAAAGTG
CAAATTGTCTCCATTAAAGAACAAACAGTCATGTCACACCTATGCTTTGT
TCCAGCCATGGTGGTACAAACATTTCATCCCAGCACCTGGGAGGTAGGCA
CAGAAGGATCAAGAATTCAAGGCCACCTTTGGCTACAAAGCAGCTTCAGA
ACCAACCTGGACTACATGAGAACCTGCCTCAAAAGGGAGATAGGGTGCAG
GGAGTATGAGTGCTGGCCAAGCAAGTTTGCTAACTAGAATTCAAGAAAAT
AATGCCAGATGCATTTGTAATCGAGATGGGAGGTAGAAACCTTAGAACAG
CTGGGAAGGCACAACACTGGAGCAAGAAAACTCCTGCTGCCCCAGAAAGT
GAGACAGAGACAGAGATAGAGACTGAGAGAGATCTAGCTCCTATAAGTTA
TTCTTTGACTTCTACAGACATGCTTTGGTGTACCTGAACATGCACATATA
CTCATGAATACATAAAATTTTAAATTACTTTAAGATGTAATTTACCAGAG
AGAG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGG
AGGAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTG
CTAGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGC
TGATTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCC
CGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGGCAGTGCGCAGAGAGG
CAGTGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACA
GGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGG
TAGAATACTTACAAATTAAAGAAATTGCCGAGTCGGTCCGTAAATACGGA
ACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGC
ACTAACTCCTGCCGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAGTA
TGGGCAAATATATGGAATGGAGAGCGCTTTGGCACGAAGCTGCACAAGCG
CAGGCCCGAGCAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGGAC
CTTTGACTTGTTAACGGGTCAGGGAGCTTATTCTGCTGATCAGACAAACT
ACCATTGGGGGAGCTTATGCCCCCAATTCTTCCCCGGCTTATATTGCCCG
TGAGAGGTTCCTCTTTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_g10.b1 MSMg01no361_g10.b1 CHROMAT_FILE:
MSMg01no361_g10.b1 PHD_FILE: MSMg01no361_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:26 2005
         (647 letters)



>mm_chr7_112850307_112851353
          Length = 1047

 Score = 1021 bits (528), Expect = 0.0
 Identities = 543/548 (99%)
 Strand = Plus / Minus

                                                                        
Query: 100  cctccctaaggtcctacctattcattgcctgaaggaaaagaatactacaataatatttgt 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cctccctaaggtcctacctattcattgcctgaaggaaaagaatactacaataatatttgt 988

                                                                        
Query: 160  aagttgagatggttgaaaactgggtcagatcacaattagaaagtgcaaattgtctccatt 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  aagttgagatggttgaaaactgggtcagatcacaattagaaagtgcaaattgtctccatt 928

                                                                        
Query: 220  aaagaacaaacagtcatgtcacacctatgctttgttccagccatggtggtacaaacattt 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  aaagaacaaacagtcatgtcacacctatgctttgttccagccatggtggtacaaacattt 868

                                                                        
Query: 280  catcccagcacctgggaggtaggcacagaaggatcaagaattcaaggccacctttggcta 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  catcccagcacctgggaggtaggcacagaaggatcaagaattcaaggccacctttggcta 808

                                                                        
Query: 340  caaagcagcttcagaaccaacctggactacatgagaacctgcctcaaaagggagataggg 399
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 807  caaagcagcttcagaaccaacctggactacatgagaacctgcctcaaaagggggataggg 748

                                                                        
Query: 400  tgcagggagtatgagtgctggccaagcaagtttgctaactagaattcaagaaaataatgc 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  tgcagggagtatgagtgctggccaagcaagtttgctaactagaattcaagaaaataatgc 688

                                                                        
Query: 460  cagatgcatttgtaatcgagatgggaggtagaaaccttagaacagctgggaaggcacaac 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  cagatgcatttgtaatcgagatgggaggtagaaaccttagaacagctgggaaggcacaac 628

                                                                        
Query: 520  actggagcaagaaaactcctgctgccccagaaagtgagacagagacagagatagagactg 579
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 627  actggagcaagaaaactcctgctgccccggaaagtgagacagagacagagatagagacag 568

                                                                        
Query: 580  agagagatctagctcctataagttattctttgacttctacagacatgctttggtgtacct 639
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 567  agagagatctagttcctaaaagttattctttgacttctacagacatgctttggtgtacct 508

                    
Query: 640  gaacatgc 647
            ||||||||
Sbjct: 507  gaacatgc 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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