BAC Information

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BAC

Clone NameMSMg01-361O05
Chromosome7 (Build37)
Map Location 97,233,115 - 97,233,576
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik
Downstream geneEG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361O05.T7 (MSMg01no361_o05.b1)MSMg01-361O05.TJ (MSMg01no361_o05.g1)
ACCAG470706AG470707
length738737
length of high quality
(start - end)		440 (53 - 492)591 (83 - 673)
definitionCHROMAT_FILE: MSMg01no361_o05.b1 PHD_FILE: MSMg01no361_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:03 2005CHROMAT_FILE: MSMg01no361_o05.g1 PHD_FILE: MSMg01no361_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTCCTTGCTGGATTGTTTCCTCTCACTGGATGGCCTT
TTGTCTCAGGCCTCCCAGGTTGGGGGAAGATCCAGATAACACAGTCAGTG
TGTCCTGCCAGATGAGAAGGATTCTTGTGACCAAAGCCTATTTTCTGCCA
GAATTCCCCAGTCTGAGGCTCTCTGCTTGCAAATTACAACCTCATCTTTG
GTATTTGGGGATCATTCTTTCCAACCAAGGGCTGTGTTTAGAAGGGCTGT
GGAGGGCATGTAGGCCCTTTTTTCACTACAGTCAGAATATTGTGCCAAGT
TTGTCAGCACACTTCCCATGATCCCATACAACAGTGTGTGTGTGTGTGTT
TATGGGTGTATGCGGAGTGCCTATGTGTATGTGTTTATATGTGTGTGTAG
TATGCCTCTGTATGTGTGAGCATGAAGGATGCCTTCTCTATCACATGTTT
TCTCATGTCAGCTCCCTGGTCCTGTGCTATCGTTCTGCCTTAACTGTCTC
CTTGGGCATTCAGATACAGCCTCTGGTTGCTCGGTCTTTCGTTTTCCTCT
TCTTCTGTGAATTGTCTCTCTCTTTCTGCCACTCCTGCCTGCCTCATTGG
CACAATAACTCGTTGTTGCTTTTCCTCGAATGCTTCAGCGCAAAATAATT
CTTTTTTTACACTTTTCTCCAGTCTTCTTTCATACTTG

NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGG
CTAAGATCAAAAACTCAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAA
AGGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACC
GGTAAGAAGAACACATGCTATGAACACTATGTTCATAGCAGCCTTGTTTA
TAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGG
ATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTATTTA
AAAAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTAT
CATCCTGAGTGAAGTAACCCAATCACAAAGGAACTCGCACAATATGTACT
CACTGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAG
ATACAACTTGCCATACGCATGATATTCAAGATGAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_o05.b1 MSMg01no361_o05.b1 CHROMAT_FILE:
MSMg01no361_o05.b1 PHD_FILE: MSMg01no361_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:03 2005
         (440 letters)



>mm_chr7_97232911_97233750
          Length = 840

 Score =  750 bits (388), Expect = 0.0
 Identities = 430/462 (93%), Gaps = 28/462 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttccttgctggattgtttcctctcactggatggccttttgtctcaggcctccc 64
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccttgttggattgtttcctctctctggatggccttttgtctcaggcctccc 264

                                                                       
Query: 65  aggttgggggaagatccagataacacagtcagtgtgtcctgccagatgagaaggattctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggttgggggaagatccagataacacagtcagtgtgtcctgccagatgagaaggattctt 324

                                                                       
Query: 125 gtgaccaaagcctattttctgccagaattccccagtctgaggctctctgcttgcaaatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgaccaaagcctattttctgccagaattccccagtctgaggctctctgcttgcaaatta 384

                                                                       
Query: 185 caacctcatctttggtatttggggatcattctttccaaccaagggctgtgtttagaaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caacctcatctttggtatttggggatcattctttccaaccaagggctgtgtttagaaggg 444

                                                                       
Query: 245 ctgtggagggcatgtaggcccttttttcactacagtcagaatattgtgccaagtttgtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtggagggcatgtaggcccttttttcactacagtcagaatattgtgccaagtttgtca 504

                                                                       
Query: 305 gcacacttcccatgatcccatacaacagtgtgtgtgtgtgtgt----------------- 347
           |||||||||||||||||||||||||||||||||||||||||||                 
Sbjct: 505 gcacacttcccatgatcccatacaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 564

                                                                       
Query: 348 -----------ttatgggtgtatgcggagtgcctatgtgtatgtgtttatatgtgtgtgt 396
                      ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 tgtgtgtgtgtttatgggtgtatgcggagtgcctatgtgtatgtgtttatatgtgtttgt 624

                                                     
Query: 397 agtatgcctctgtatgtgtgagcatgaaggatgccttctcta 438
           |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 agtatgtctctgtatgtgtgagcatgaaggatgccttctcta 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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