BAC Information

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BAC

Clone NameMSMg01-362C09
Chromosome7 (Build37)
Map Location 51,244,805 - 51,245,005
singlet/doubletsinglet
Overlap geneKlk1b10-ps
Upstream geneLOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9
Downstream geneKlk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362C09.T7 (MSMg01no362_c09.b1)MSMg01-362C09.TJ (MSMg01no362_c09.g1)
ACCAG470903AG470904
length774793
length of high quality
(start - end)
509 (46 - 554)211 (73 - 283)
definitionCHROMAT_FILE: MSMg01no362_c09.b1 PHD_FILE: MSMg01no362_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:24 2005CHROMAT_FILE: MSMg01no362_c09.g1 PHD_FILE: MSMg01no362_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTGCTTCATGGTGGGTTTTATGGAGAACATGGAACAATGTTAC
ACTCAGGCATTTTTTGTCATAGTGTCATTTATCCAGGAGTTGAACTTAAT
AAGTTTAGTGTAGACACTTGGTATACAAGGTGAACTGCGTGTTATAGTGC
CATTGATGGAGAACACCATCATAATATAGTCTCATGATGGAGAACACCAT
CACAGATCAGTGGGCTGCCTGAGTCTCCCTGAAAGAAGGACAGGGACAGG
AGGAAGGCAGGACCTGACAGTTGGATTCTTGTAGACAACCTGGAACTGAC
TCCCAGGGAGGAATACAGGGACTGTAAGAGGCAGCTCTGTTCAATAGGTG
AGGGAATACAGCTCTTGGGAGCCCAGATCTTGTGAGGTCATTGGGTTGTA
GTGAGGGCCTCACAGGACCATCCCCTATGCCAAGTCACAGAGGAGAAATA
GTACCAGATACAGGATCCCCCCACTCCCAGGGTGCATCCCTTACATAAGG
AAGGATGCAAAGAGCCTGCCTAGTCAGGGTGTTGAAGTGGGAACCAAGAA
GCTCATTTCCCTCTTTCAGCCCCTTCGCCTCTTGGCACAAAGTGCCTGTT
CTCTTTTGTCAGTGGCTTTTGTCTTTCACCCTTCTTTTTTTGATTCCGCC
TTGAATTCCGTGACCTCCCTGTCCTTTGGGTTTTCTACTCCCTCTCTCTT
TTTTCTTCCTACTTTTCTCTACCN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCAAAACCCAGCCAAGGCTGTGACGTCT
TCTTAAACCTTGGAGACTCTAAATTCGATATCAGAGGATATCATTTTCAT
TGGACTAAGAATAAACTGGAATTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTC
TCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCCCCCCTCTCTCTCTCTCT
ACCTTGGTGTTTCTTATTTCTAAACTATTAGAGTGACCTGACTTTATACC
CAATTCCCGATTCAAGTGTTATTTCTGTCATCACAGAATAGTTCTCCCCA
TCCAGTACCACCCATATATTGGTCTTTACCCGTGATTCCTTGCATACGTC
TTTAGTTTTTCTTTCCGTGCTAAGTTATGTCCCCCAACGGTACTTGTGCT
TTCTTTGTGGCCTGCTCTGTCTTTTCCTGGATGCGTCCTTGGTGCTCCAT
GCCCTATTTCCCGGTCCTTTCTTTGTTTCTCCCCGCCCCCCTTTATTTGT
CCCCGTTTACGCCTTTACCCCTGGTCTGTTGGTTTTTTGTTTTGCCCACG
CTCACGCCTTCGCTTTTTGTTTATCGGGTATGGTGCGTCCAATGTTGCTA
TTTTCTCTTGTCATCTAGTTATTTTTCGGTGTGATGTGTCTTGTTATTAC
CCCCCCTCTTCTCTCTCTCCTTTTTTCCTCTCCCTCTCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_c09.g1 MSMg01no362_c09.g1 CHROMAT_FILE:
MSMg01no362_c09.g1 PHD_FILE: MSMg01no362_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:24 2005
         (211 letters)



>mm_chr7_51244605_51245215
          Length = 611

 Score =  315 bits (163), Expect = 1e-90
 Identities = 193/203 (95%), Gaps = 2/203 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaaacccagccaaggctgtgacgtcttcttaaaccttggagactctaaattcgatatc 60
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaaaccaagccaaggccgtgacgtcttcttaaaccttggagactctaaattcgatatc 260

                                                                       
Query: 61  agaggatatcattttcattggactaagaataaactggaattctctctctctctctctctc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 agaggatatcattttcattggactaaaaataaactggaattctctctctctctctctctc 320

                                                                       
Query: 121 tctctctctctctctctctctctctctctctctctccctctccctctccctctccctctc 180
           |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct: 321 tctctctctctctctctccctctccctctccctctccctctccctctccctctccct-tc 379

                                  
Query: 181 cctctccctctccctctctctct 203
           || ||||| | ||||||||||||
Sbjct: 380 cc-ctccccccccctctctctct 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)