BAC Information

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BAC

Clone NameMSMg01-362D01
Chromosome7 (Build37)
Map Location 86,172,098 - 86,172,424
singlet/doubletsinglet
Overlap genenone
Upstream geneA330068G13Rik, Ntrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20
Downstream geneAcan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362D01.T7 (MSMg01no362_d01.b1)MSMg01-362D01.TJ (MSMg01no362_d01.g1)
ACCAG470935AG470936
length767777
length of high quality
(start - end)
498 (44 - 541)330 (71 - 400)
definitionCHROMAT_FILE: MSMg01no362_d01.b1 PHD_FILE: MSMg01no362_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:28 2005CHROMAT_FILE: MSMg01no362_d01.g1 PHD_FILE: MSMg01no362_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCTGGGCTAATGGATGGCTGGAAGGAGAAGGCAAACGCCACCCTCC
TCTTTCTCTGACATAGCTTCTCTACATAGCCATGTCAGGCCTGGATCTTG
GTGTAGACCAGGCTGTTTTTAAATTCATGGCAATCCTATCTTTATATCCT
GAGTTCTGGAGTACAGGCATGTACCATCATGCCAAGCTAAGGAGGCAGTT
AAAAAATTGTGTATGCATGTGCACACATCAGTGCACGTGGGTGCGGTTGT
TCTCCAAGGACAGAGACATCAGATTCCTTTGGAACTGTAGTTATAGGCAG
TTGTGAGCTGCCTACATTGGTTCTGGGAATCTAACTGAAGTCCTCTCCTA
CAAGAGTAGTCCATACTCCTAATGGCTGAACTGTCTCTCGAGCCCCAAGG
AGTCAATGTCTAAGGGAATAGAGCAAGTGTGTCTGGGCAGCAGCTTGGCA
CAGTCTTCAGGTAGGTAATGTGTGAATCTGAAATCCAAATTCAGGACTCA
GGCTCCAGAACTTTCTTTAACCATTCCTGGATGCCTGTTGCAGACCGGCA
GACCTCATGAGTGAGAAGACCCATCCGGTACCCTTTCTCTTGTTGAGGGG
CAGCGCCCCCTGGTTTGTTCCCACTGCTCCTCCGCCTCACCCATTTATAG
AATGTTATTTTATCCCCGCACTGGCACATACTTTCCCAAAGATCTTCCCG
GTTTGGTTTTTTTTTCC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTATTCAATGAACTCTCCTGAAAGGTGACG
GGGATTACCTCACCAGGCAAAGCCACCATGGAACTTGTATGTGGTACGAG
AAGATCAGCAATGCACGGGTAACTATACGTCAAAGAGTGAAGTGCCATGG
AGGTAAAACAGAGCAGGAGAGAGGCAGGCAGGGTCCCAGGTCGGGTTGAA
GGCTGACCGGAAGACATATCTGAGCAAAGGTGCCAAAGAGTCCAGGAGTG
TGCCATGCACACATCTGCAGGAGAGAGAAGCCAGGTCAAGGGTGGAGACA
CCAGAGCATGCCTGGCTAGAGACCAGGGAGGATGGGGGTGGGGGTGGNNN
NNNNNNNTNTTTNTTTNTTTTTTGTTNTTTTTGTTTTNTGTGTTTGTTTT
TTTTTTTTTTTTTGGTTTTTTCTTTTTTTGTTGTTTNTTTTTTTTTTTTT
GTTTTTTTTTTGTTTTTTTTTTTTGTTGTTTTTGTTTTTGTTTTTGTTTT
TTGTGTTTTGTTTTTTTTTTTGTNGGGCGGTTTTGTTTTTTTTTCTTCTT
TGTCCTCCTCTTCTTTTTCCCCTCCGCTTCCTTTTCTCTTTTCCCTCTTC
TTTTTCCCCTCTTCCTGTCTCTCCCTCTTTTTCCCCTTCTCCCTTTTCCC
CGTCTTCTTTTCTTTTTTTTCCTTTCTTCTTTTCTCCCTCTTTTTCTCTC
TCTTGCTTTTTCCTTCTTTCCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_d01.g1 MSMg01no362_d01.g1 CHROMAT_FILE:
MSMg01no362_d01.g1 PHD_FILE: MSMg01no362_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:28 2005
         (330 letters)



>mm_chr7_86171898_86172627
          Length = 730

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcaatgaactctcctgaaaggtgacggggattacctcaccaggcaaagccaccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcaatgaactctcctgaaaggtgacggggattacctcaccaggcaaagccaccatg 260

                                                                       
Query: 61  gaacttgtatgtggtacgagaagatcagcaatgcacgggtaactatacgtcaaagagtga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gaacttgtatgtggtacgagaagatcagcaatgcacgggtaactgtacgtcaaagagtga 320

                                                                       
Query: 121 agtgccatggaggtaaaacagagcaggagagaggcaggcagggtcccaggtcgggttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgccatggaggtaaaacagagcaggagagaggcaggcagggtcccaggtcgggttgaa 380

                                                                       
Query: 181 ggctgaccggaagacatatctgagcaaaggtgccaaagagtccaggagtgtgccatgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgaccggaagacatatctgagcaaaggtgccaaagagtccaggagtgtgccatgcac 440

                                                                       
Query: 241 acatctgcaggagagagaagccaggtcaagggtggagacaccagagcatgcctggctaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatctgcaggagagagaagccaggtcaagggtggagacaccagagcatgcctggctaga 500

                                      
Query: 301 gaccagggaggatgggggtgggggtgg 327
           |||||||||||||||||||||||||||
Sbjct: 501 gaccagggaggatgggggtgggggtgg 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)