BAC Information

Click to search

BAC

Clone NameMSMg01-362E17
Chromosome7 (Build37)
Map Location 94,751,044 - 94,880,518
singlet/doubletdoublet
Overlap geneGrm5
Upstream geneOlfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362E17.T7 (MSMg01no362_e17.b1)MSMg01-362E17.TJ (MSMg01no362_e17.g1)
ACCAG471015AG471016
length711774
length of high quality
(start - end)		426 (47 - 472)470 (78 - 547)
definitionCHROMAT_FILE: MSMg01no362_e17.b1 PHD_FILE: MSMg01no362_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:36 2005CHROMAT_FILE: MSMg01no362_e17.g1 PHD_FILE: MSMg01no362_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,880,097 - 94,880,518)(94,751,044 - 94,751,513)
sequence
NACTTACTCCTCGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTTGGATGACTCCTTGGCAAGGTTGTATAGGTTACCAACTTCT
GAAATTTTCTCTCTCAGCAAAACTATACTAGTCCTCACCACACAGACTCC
CTTTATAAACCTATTGCATATACAGCACACATACACACACACACAGACAC
ACACACACGGACACACACACACGGACACACAGGGACACACACAAGTTAAA
TGTACATGCTTTTTGATTTTATTTTTTTGAGTAACCTTCTCCTGTCCCTG
AAATACCCTGCATATCCTGTAGGTTTCTACATTTAACCTTTTCTGATCTC
CCTGACATTATCAGGATATCCATGCAGCTTTCTGACTTCCTTGCTGTCAC
CCAAAGGAGACCATTTGCACAAGGGATTGTACAGTGGCGTCTCCCTTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGAATAATATATTAA
AAGGAAACCCGGAAATGAAACCCCCGTAATAATTGGCGGGGGTGTGCCCC
AGCAAAAAATTTACCAATTTTTTTCTGGGGGGGGATAAACCATTTTCCCC
TCCCTCCGGGGGTTGGGTGGCCTAATTTTTATTCCCTTTTTTTCCCTCTC
TTATCTTTTTCCCTCCTATTAACTCTTTTCTTTTCCTCCTCTATGATTCT
CTTCTTACTCG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCCTAAAATGGTCCTTCTGT
TGATTCTGTCAGTCCTACTTCTGAAAGAAGATGTACGAGGAAGTGCACAG
TCCAGTGAGAGGAGGGTGGTGGCTCACATGCCAGGTGACATTATTATTGG
AGCTCTCTTCTCGGTCCACCACCAACCAACTGTGGACAAAGTTCACGAGA
GGAAGTGTGGGGCAGTCCGTGAGCAGTATGGCATTCAGAGAGTGGAAGCC
ATGCTGCATACCTTGGAAAGGATCAATTCAGATCCCACACTCCTGCCCAA
CATCACACTAGGCTGTGAGATAAGAGATTCCTGCTGGCATTCTGCTGTGG
CCCTAGAGCAAAGCATTGAGTTTATAAGGGATTCCCTCATCTCTTCGGAA
GAGGAAGAAGGCTTGGTACGCTGTGTAGATGGCTCTTCTTCCTTCCGCTC
CAAGAAACCCATAGTGGGAGTCATTGGGCCTGGCTCGAGTTCTGTGGCCA
TTCAAGTTCAGAACTTGCTCCAGCTTTTCAACATACCTCAGATTGCTTAC
TCTGCAACTAGCATGGATTTGAGTGACAAGACTCTATTTCCAGAATTTTT
TGAGGGTTGGACCTTTCCGATGCCCACCAAGCCCGAACCATGGTAAAAAT
AATTGAAAAAAAACCACTTGGGTTTTTTGTCCCCCTCGTTCTCCCCAATA
ATTTGTGTCACCTCTCACCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_e17.b1 MSMg01no362_e17.b1 CHROMAT_FILE:
MSMg01no362_e17.b1 PHD_FILE: MSMg01no362_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:36 2005
         (426 letters)



>mm_chr7_94879726_94880551
          Length = 826

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttggatgactccttggcaaggttgtataggttaccaacttctgaaattttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattcctttggatgactccttggcaaggttgtataggttaccaacttctgaaattttct 734

                                                                       
Query: 65  ctctcagcaaaactatactagtcctcaccacacagactccctttataaacctattgcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctctcagcaaaactatactagtcctcaccacacagactccctttataaacctattgcata 674

                                                                       
Query: 125 tacagcacacatacacacacacacagacacacacacacggacacacacacacggacacac 184
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 673 tacagcacacatacacacacgcacggacacacacacacggacacacacacacggacacac 614

                                                                       
Query: 185 agggacacacacaagttaaatgtacatgctttttgattttatttttttgagtaaccttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agggacacacacaagttaaatgtacatgctttttgattttatttttttgagtaaccttct 554

                                                                       
Query: 245 cctgtccctgaaataccctgcatatcctgtaggtttctacatttaaccttttctgatctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cctgtccctgaaataccctgcatatcctgtaggtttctacatttaaccttttctgatctc 494

                                                                       
Query: 305 cctgacattatcaggatatccatgcagctttctgacttccttgctgtcacccaaaggaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cctgacattatcaggatatccatgcagctttctgacttccttgctgtcacccaaaggaga 434

                                                                       
Query: 365 ccatttgcacaagggattgtacagtggcgtctcccttgctgctgctgctgctgctgctgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccatttgcacaagggattgtacagtggcgtctcccttgctgctgctgctgctgctgctgc 374

             
Query: 425 tg 426
           ||
Sbjct: 373 tg 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_e17.g1 MSMg01no362_e17.g1 CHROMAT_FILE:
MSMg01no362_e17.g1 PHD_FILE: MSMg01no362_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:36 2005
         (470 letters)



>mm_chr7_94750844_94751713
          Length = 870

 Score =  893 bits (462), Expect = 0.0
 Identities = 468/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcctaaaatggtccttctgttgattctgtcagtcctacttctgaaagaagatgtacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcctaaaatggtccttctgttgattctgtcagtcctacttctgaaagaagatgtacg 260

                                                                       
Query: 61  aggaagtgcacagtccagtgagaggagggtggtggctcacatgccaggtgacattattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagtgcacagtccagtgagaggagggtggtggctcacatgccaggtgacattattat 320

                                                                       
Query: 121 tggagctctcttctcggtccaccaccaaccaactgtggacaaagttcacgagaggaagtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tggagctctcttctcggtccaccaccaaccaactgtggacaaagttcatgagaggaagtg 380

                                                                       
Query: 181 tggggcagtccgtgagcagtatggcattcagagagtggaagccatgctgcataccttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggggcagtccgtgagcagtatggcattcagagagtggaagccatgctgcataccttgga 440

                                                                       
Query: 241 aaggatcaattcagatcccacactcctgcccaacatcacactaggctgtgagataagaga 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggatcaattcagatcccacactcttgcccaacatcacactaggctgtgagataagaga 500

                                                                       
Query: 301 ttcctgctggcattctgctgtggccctagagcaaagcattgagtttataagggattccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctgctggcattctgctgtggccctagagcaaagcattgagtttataagggattccct 560

                                                                       
Query: 361 catctcttcggaagaggaagaaggcttggtacgctgtgtagatggctcttcttccttccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catctcttcggaagaggaagaaggcttggtacgctgtgtagatggctcttcttccttccg 620

                                                             
Query: 421 ctccaagaaacccatagtgggagtcattgggcctggctcgagttctgtgg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccaagaaacccatagtgggagtcattgggcctggctcgagttctgtgg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |