BAC Information

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BAC

Clone NameMSMg01-362F15
Chromosome7 (Build37)
Map Location 69,338,600 - 69,537,109
singlet/doubletdoublet
Overlap geneNdn, Magel2
Upstream geneD0Kist2, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneMkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362F15.T7 (MSMg01no362_f15.b1)MSMg01-362F15.TJ (MSMg01no362_f15.g1)
ACCAG471057AG471058
length737754
length of high quality
(start - end)		508 (48 - 555)516 (77 - 592)
definitionCHROMAT_FILE: MSMg01no362_f15.b1 PHD_FILE: MSMg01no362_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:41 2005CHROMAT_FILE: MSMg01no362_f15.g1 PHD_FILE: MSMg01no362_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,338,600 - 69,339,103)(69,536,594 - 69,537,109)
sequence
NCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATAATTATCAAACTATTGTAGACTAAGAGTATCTCCAACTAA
AGCAAAGGTATATTACTTTTTGTTCTATGGTCAAACTCATCTAAATTTCA
CAAGGAACATTAGTAAAAGAACTAAATTTGACCTAATATTCAGATAAAGA
AAAGCAAAGAGGGAGAACTTGAACTTTGGGCCATGTTTCAAAACTTATGA
TAAATTAGTTTCAATAAAGATATCTGAATATGATATATAGTTAAGCATAT
ATTAGTAAAATGAAACCAAATAACAAAATAAACACTTAATTAGCACTTGT
GAATATGATCATGGTGTGTGAGAATGTTGCAAACTGTGCATATGTGTATG
AATGTATAGTGAACATCAGGGCTTTTAATCAATCGAATTCTGTCTATCTT
TAGAGATATCATTCGTCCCTAATTTTAGAGATGAGCAGCTAAATAAACTA
GCAGACCATTTCTAGGATGAGGATGGCATGATACCATTTCCAGTTTCTTT
GTTGGTTGGTTTGTTTCTGTAACTGCTAGGGATACAATGTCATATATCTG
CAAGTTCAGTGAGAAACACTATATAAGTGAGCAATCCCCAAACATAAAAT
ATTTATAGTTAAAATCAATGATTATCAAAAACGTCTGAGATTTTCAATAG
ATCCAGTAATTTTTGAAGCTATCAGTAAAGTTGATAC

NCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCTGAGCCCTTGGTCATACT
TTTAAAGCCTCTTTTTGTCACTCACAGTGATTGGTGACTTGCCTAGATCT
ATTATCTTAAAGTGTCAAATCTTCAGGCAAACAAAAGGAGGTGTAGAAGA
ATTGGAAGACCACAGAGCTCGTTCTGTTTCATCTCTTCCTATAGCAATTT
GTGGTTATTTTATGCCATCGGATTAAGAACCTTCAAATAACAGCTGGGTA
AGGTGGTTCATTGCTATAATCCCTGAGTATGAAACTATTGATGTGAAACT
TCTTGTGCCTTAAAAAAGGCGTCCTTGGATCTGAGTGTGATATAGACTTT
CCAACCAGAGGAAGCAACGCTCACTAGACACATCATGGGGGATGTGTTTA
GGAAGTAGAAGTGACATAGCTAGTTTCTGGGAATGGTACGGAAAGTAAAG
GAAATGAGATAGAAGAAGAATGTTAAGCCTATATTCCCTAGGGCTACATT
GAAAATGGTGACGCACTTATTCAGTACAGTTGTTTGGGAATGTCAAGCAG
AAGCTTGTAAAAAAGNAAACATATGGGTTTATTGGGATATTTGTGTTTTA
AATAAGATTTAATATTTATCCTACATTGTANGGAGAGTATAGGAAATGAT
ATATACAAGAAAGTTGGGCCTATATTCTCCAGGGCTGGATTGAAATTGGT
GACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_f15.b1 MSMg01no362_f15.b1 CHROMAT_FILE:
MSMg01no362_f15.b1 PHD_FILE: MSMg01no362_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:41 2005
         (508 letters)



>mm_chr7_69338396_69339303
          Length = 908

 Score =  951 bits (492), Expect = 0.0
 Identities = 501/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataattatcaaactattgtagactaagagtatctccaactaaagcaaaggtat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataattatcaaactattgtagactaagagtatctccaactaaagcaaaggtat 264

                                                                       
Query: 65  attactttttgttctatggtcaaactcatctaaatttcacaaggaacattagtaaaagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attactttttgttctatggtcaaactcatctaaatttcacaaggaacattagtaaaagaa 324

                                                                       
Query: 125 ctaaatttgacctaatattcagataaagaaaagcaaagagggagaacttgaactttgggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaaatttgacctaatattcagataaagaaaagcaaagagggagaacttgaactttgggc 384

                                                                       
Query: 185 catgtttcaaaacttatgataaattagtttcaataaagatatctgaatatgatatatagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 catgtttcaaaacttatgataaattagtttcaataaagatatctgaatatgatatatggt 444

                                                                       
Query: 245 taagcatatattagtaaaatgaaaccaaataacaaaataaacacttaattagcacttgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taagcatatattagtaaaatgaaaccaaataacaaaataaacacttaattagcacttgtg 504

                                                                       
Query: 305 aatatgatcatggtgtgtgagaatgttgcaaactgtgcatatgtgtatgaatgtatagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatatgatcatggtgtgtgagaatgttgcaaactgtgcatatgtgtatgaatgtatagtg 564

                                                                       
Query: 365 aacatcagggcttttaatcaatcgaattctgtctatctttagagatatcattcgtcccta 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 565 aacatcagggcttttaatcaatcgaattctgtctatctttagagatatcattcgtcgctg 624

                                                                       
Query: 425 attttagagatgagcagctaaataaactagcagaccatttctaggatgaggatggcatga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attttagagatgagcagctaaataaactagcagaccatttctaggatgaggatggcatga 684

                                   
Query: 485 taccatttccagtttctttgttgg 508
           ||||||||||||||||||||||||
Sbjct: 685 taccatttccagtttctttgttgg 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_f15.g1 MSMg01no362_f15.g1 CHROMAT_FILE:
MSMg01no362_f15.g1 PHD_FILE: MSMg01no362_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:41 2005
         (516 letters)



>mm_chr7_69536394_69537309
          Length = 916

 Score =  967 bits (500), Expect = 0.0
 Identities = 512/516 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccctgagcccttggtcatacttttaaagcctctttttgtcactcacagtgattggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tttccctgagcccttggtcatacttttaaagcctctttttgtcactcacagtgattggtg 657

                                                                       
Query: 61  acttgcctagatctattatcttaaagtgtcaaatcttcaggcaaacaaaaggaggtgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 acttgcctagatctattatcttaaagtgtcaaatcttcaggcaaacaaaaggaggtgtag 597

                                                                       
Query: 121 aagaattggaagaccacagagctcgttctgtttcatctcttcctatagcaatttgtggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aagaattggaagaccacagagctcgttctgtttcatctcttcctatagcaatttgtggtt 537

                                                                       
Query: 181 attttatgccatcggattaagaaccttcaaataacagctgggtaaggtggttcattgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 attttatgccatcggattaagaaccttcaaataacagctgggtaaggtggttcattgcta 477

                                                                       
Query: 241 taatccctgagtatgaaactattgatgtgaaacttcttgtgccttaaaaaaggcgtcctt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 taatccctgagtatcaaactattgatgtgaaacttcttgtgccttaaaaaaggcgtcctt 417

                                                                       
Query: 301 ggatctgagtgtgatatagactttccaaccagaggaagcaacgctcactagacacatcat 360
           |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct: 416 ggatctgagtgtgatatagactttccaaccagagaaagcaacactcacaagacacatcat 357

                                                                       
Query: 361 gggggatgtgtttaggaagtagaagtgacatagctagtttctgggaatggtacggaaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gggggatgtgtttaggaagtagaagtgacatagctagtttctgggaatggtacggaaagt 297

                                                                       
Query: 421 aaaggaaatgagatagaagaagaatgttaagcctatattccctagggctacattgaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaaggaaatgagatagaagaagaatgttaagcctatattccctagggctacattgaaaat 237

                                               
Query: 481 ggtgacgcacttattcagtacagttgtttgggaatg 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggtgacgcacttattcagtacagttgtttgggaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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