BAC Information

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BAC

Clone NameMSMg01-362K22
Chromosome7 (Build37)
Map Location 106,816,552 - 107,002,147
singlet/doubletdoublet
Overlap geneSlco2b1, Olfr520, Olfr521, Neu3, Spcs2
Upstream geneLOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190
Downstream geneXrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362K22.T7 (MSMg01no362_k22.b1)MSMg01-362K22.TJ (MSMg01no362_k22.g1)
ACCAG471309AG471310
length753764
length of high quality
(start - end)		476 (50 - 525)461 (78 - 538)
definitionCHROMAT_FILE: MSMg01no362_k22.b1 PHD_FILE: MSMg01no362_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:08 2005CHROMAT_FILE: MSMg01no362_k22.g1 PHD_FILE: MSMg01no362_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,001,724 - 107,002,147)(106,816,552 - 106,817,012)
sequence
NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTAGAACTCACTGTGTGACCAGCCTGGCCTTGAACTCAAGTT
GATTTGTGTGCCTGTGCCTTCCAGAGTGCTAAGACTAAAGACGAGTACCT
GACTTTGTTGTTCTTAGGCGGGGTCTCCTGTGTTGTAGGTTGGCCTCTAG
CCTCCCAAGTGCTGGGATTAGCATTGATTTATGTGGTGCTGGGGGTTGAA
CCTAGGGCTTCCTGCGCGCCAGGCAAGCCCTCTACTGGCTGAACTATGTC
CTGCCTCCTCATCGTTTCCAGCCTTAGCGCTCAGATGGACTGGCATCAAT
TGAGGGATATTTAAGCTGTAGTGTCCATGAACTGAGGCTGTCCCCACAGA
ACTGCAGCAGTGTAGGCTTCCTGAGTCAAGGGGCCAGACTGGGACCACAG
AGAAAGCAGTGGGGGGAATTTTTTCCCTCAGTTTCTCTGGAGTTGCCACT
AATGTGCATGTTCATAATTTAATTGACACATGGTAATTTCTAACCTCCAA
GTAACTCATAAATGCAACCACTAATAAACCCTCGTATACCAGCCATTTCC
ATTACAGTATTTCTTGGGCCTTTAAAAAAACCCTTGAAATTAAAGGTTCA
AGTGGCTACAGTTGGAATCTCCCGTTTGTGGATATCCCGGGATTTTCCAG
GGGATCTATAATATGCCCTTGTTATTTTTCAATAACAACCCTCTTTTCTT
TCG

NNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATGGGATGTGGGCAGGAGAG
CAGGCTGGAGACAGGCAGTAATCATGACTGTTCTGGCGTTGGGGACCTCC
CTAGGATCTGGGTAGATCTGGAGTCCTACCTCAGTGCCTTGTTCAGGCTG
CCCTTCCTAAAAGTGCTAAACCTTTGAGCTCAGAATAGTTGGTAAATCCC
TCCCTTCCTTCCTGGGTTCCGTGTTCGGGCGAGTAGGGTGTACAGGGATG
CCTGAGGACAGTTTCTGCTCTGATGGATGGGTTTCTCCGCTGTTAGACAG
ACAGACAGACAGAATGGGAAAGAAACAAGAGAAACCTGAATGTGCTAGTG
AGGAGAGACATCCATAGAGGCCAGGCTAGAGAAAGAGCCTTTGATTCCTG
CCAGACCAAAGCCTGCATCCCTGTGTTATAGGAGACACATTTTATCTCTC
CTCAGAGCATAGTCAGACTAGCTTGATCACTATCCTCAAAGTCTGGGCTT
GTTTCCTTCAGAGCCAGAANATAAGTCCGCCCCTGTAGGGGTGAGTAAGG
ACCACATTCCCAAACGGCCCCCTTCTAGCCCCTAAGCCTTTTGCTTCCGA
CAAGTTATTCTGCTAAATATTGGGTAGGATTTAAGTGGGCCCTAAAAAAT
CCTTCTAGGTAGGTGGTGGCCGCCCTTTCCTCTCGGCCTCCCTGGTGTTT
TCCTTTCTTCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_k22.b1 MSMg01no362_k22.b1 CHROMAT_FILE:
MSMg01no362_k22.b1 PHD_FILE: MSMg01no362_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:08 2005
         (476 letters)



>mm_chr7_107001272_107002147
          Length = 876

 Score =  797 bits (412), Expect = 0.0
 Identities = 421/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 53  atttgtgtgcctgtgccttccagagtgctaagactaaagacgagtacctgactttgttgt 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 atttgtgtgcctgtgccttccagagtgctaagactaaagacgagtacctgactttgttgt 817

                                                                       
Query: 113 tcttaggcggggtctcctgtgttgtaggttggcctctagcctcccaagtgctgggattag 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tcttaggcggggtctcctgtgttgtaggttggcctctagcctcccaagtgctgggattag 757

                                                                       
Query: 173 cattgatttatgtggtgctgggggttgaacctagggcttcctgcgcgccaggcaagccct 232
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cattgatttatgtgatgctgggggttgaacctagggcttcctgcgcgccaggcaagccct 697

                                                                       
Query: 233 ctactggctgaactatgtcctgcctcctcatcgtttccagccttagcgctcagatggact 292
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 696 ctactggctgaactatgtcctgcctcctcatcgtttccagccttatcgctcagatggact 637

                                                                       
Query: 293 ggcatcaattgagggatatttaagctgtagtgtccatgaactgaggctgtccccacagaa 352
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggcatcatttgagggatatttaagctgtagtgtccatgaactgaggctgtccccacagaa 577

                                                                       
Query: 353 ctgcagcagtgtaggcttcctgagtcaaggggccagactgggaccacagagaaagcagtg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctgcagcagtgtaggcttcctgagtcaaggggccagactgggaccacagagaaagcagtg 517

                                                                       
Query: 413 gggggaattttttccctcagtttctctggagttgccactaatgtgcatgttcataattta 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gggggaattttttccctcagtttctctggagttgccactaatgtgcatgttcataattta 457

               
Query: 473 attg 476
           ||||
Sbjct: 456 attg 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_k22.g1 MSMg01no362_k22.g1 CHROMAT_FILE:
MSMg01no362_k22.g1 PHD_FILE: MSMg01no362_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:09 2005
         (461 letters)



>mm_chr7_106816352_106817212
          Length = 861

 Score =  884 bits (457), Expect = 0.0
 Identities = 460/461 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaatgggatgtgggcaggagagcaggctggagacaggcagtaatcatgactgttctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatgggatgtgggcaggagagcaggctggagacaggcagtaatcatgactgttctggc 260

                                                                       
Query: 61  gttggggacctccctaggatctgggtagatctggagtcctacctcagtgccttgttcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttggggacctccctaggatctgggtagatctggagtcctacctcagtgccttgttcagg 320

                                                                       
Query: 121 ctgcccttcctaaaagtgctaaacctttgagctcagaatagttggtaaatccctcccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcccttcctaaaagtgctaaacctttgagctcagaatagttggtaaatccctcccttc 380

                                                                       
Query: 181 cttcctgggttccgtgttcgggcgagtagggtgtacagggatgcctgaggacagtttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctgggttccgtgttcgggcgagtagggtgtacagggatgcctgaggacagtttctg 440

                                                                       
Query: 241 ctctgatggatgggtttctccgctgttagacagacagacagacagaatgggaaagaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgatggatgggtttctccgctgttagacagacagacagacagaatgggaaagaaaca 500

                                                                       
Query: 301 agagaaacctgaatgtgctagtgaggagagacatccatagaggccaggctagagaaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagaaacctgaatgtgctagtgaggagagacatccatagaggccaggctagagaaagag 560

                                                                       
Query: 361 cctttgattcctgccagaccaaagcctgcatccctgtgttataggagacacattttatct 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 cctttgattcctgccagaccaaagcctgcatccctatgttataggagacacattttatct 620

                                                    
Query: 421 ctcctcagagcatagtcagactagcttgatcactatcctca 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcctcagagcatagtcagactagcttgatcactatcctca 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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