Query= MSMg01no362_k23.b1 MSMg01no362_k23.b1 CHROMAT_FILE:
MSMg01no362_k23.b1 PHD_FILE: MSMg01no362_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:09 2005
(567 letters)
>mm_chr7_127477724_127478688
Length = 965
Score = 975 bits (504), Expect = 0.0
Identities = 554/585 (94%), Gaps = 24/585 (4%)
Strand = Plus / Plus
Query: 5 gaattctttttgttgtaaatggatttgtttatgaaaatgatggcgttgaagtagttgaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gaattctttttgttgtaaatggatttgtttatgaaaatgatggcgttgaagtagttgaag 242
Query: 65 aaactggattcccaatagtgttagtgagatgcagaaacagtgacacctgggaggaagcag 124
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 243 gaactggattcccaatagtgttagtgagatgcagaaacagtgacacccaggagggagcag 302
Query: 125 aggtgacaggtatggaggagaatgtgctttgacagtgggaactcagagagagagaga--- 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggtgacaggtatggaggagaatgtgctttgacagtgggaactcagagagagagagagag 362
Query: 182 ------------------a-agagagagagcacttctcttgtgtgtctctgggaatcaga 222
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agagagagagagagagagagagagagagagcacttctcttgtgtgtctctgggaatcaga 422
Query: 223 atcaggaatttgctggaagaataaagccatgtcagtttaagcaataaaactccatgggac 282
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 423 atcaggaatttgctggaagaataaagccatgtcagtctaagcaataaaactccatgggac 482
Query: 283 tccattttcaccacagcagctgttaagtcattggcattctgtttacatcaaccatgcttc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tccattttcaccacagcagctgttaagtcattggcattctgtttacatcaaccatgcttc 542
Query: 343 tgattctaggatcagaattctaaagattctgaatctttagagtatccagtgtactgtata 402
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 tgattctaggatcagaattctaaagattctgaatctttagagtatccaatgtactgtata 602
Query: 403 caaatgttctgtacatgaaataactgatttttttttacttagaaaaatacaaattacacc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 caaatgttctgtacatgaaataactgatttttttttacttagaaaaatacaaattacacc 662
Query: 463 tattctaaggtcaatcaggttgaatttcaaagttagattcactgatcgaaaaaaaaaatc 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 663 tattctaaggtcaatcaggttgaatttcaaagttagattcactgatcgaaaaaaaa--tc 720
Query: 523 tcaatgattgaaacatacttacctcaagtagtanaatcatgaagt 567
||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 721 tcaatgattgaaacatacttacctcaagtagtaaaatcatgaagt 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 965
Length adjustment: 10
Effective length of query: 557
Effective length of database: 955
Effective search space: 531935
Effective search space used: 531935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_k23.g1 MSMg01no362_k23.g1 CHROMAT_FILE:
MSMg01no362_k23.g1 PHD_FILE: MSMg01no362_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:09 2005
(461 letters)
>mm_chr7_127631734_127632598
Length = 865
Score = 837 bits (433), Expect = 0.0
Identities = 456/465 (98%), Gaps = 4/465 (0%)
Strand = Plus / Minus
Query: 1 aatctccagcattgcaaagaaattaattttttaaatgaatagctaggaaatttcagaaga 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 665 aatctccagcattgcaaagaaattaatttttttaatgaatagctaggaaatttcagaaga 606
Query: 61 cttatatgttaaatataaggagttggtacattacaatggagaatgacaaataaaacatta 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cttttatgttaaatataaggagttggtacattacaatggagaatgacaaataaaacatta 546
Query: 121 aagtcattaaaattatttgccatataatgagtttaccacatatttccccaatatatctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aagtcattaaaattatttgccatataatgagtttaccacatatttccccaatatatctca 486
Query: 181 tggagaaaagcagaccttttttt-gtgtgtgacaaaaatgtacagcttcaatctaataat 239
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 485 tggagaaaagcagaacttttttttgtgtgtgacaaaaatgtacagcttcaatctaataat 426
Query: 240 gaagcaataaaatccagacattattgaatctactttacaaaaaaaaaaaaa---caacaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 425 gaagcaataaaatccagacattattgaatctactttacaaaaaaaaaaaaaaaacaacaa 366
Query: 297 aaagcttgcattaaaaaagtgtgaaagttataaagacaaattaggtaacaaatggtatgt 356
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaagcttgcattaaaaaagtatgaaagttataaagacaaattaggtaacaaatggtatgt 306
Query: 357 gacacatattagagaggcaatggctcttctgtgagaatgcagtttgggtcttggactgag 416
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gacacatattagagaggcaacggctcttctgtgagaatgcagtttgggtcttggactgag 246
Query: 417 aaaaaaattcaaaatctacagactagttaccagtatatcgtacct 461
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaaaaaattcaaaatctacagactagttaccagtatatcgtacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 865
Length adjustment: 10
Effective length of query: 451
Effective length of database: 855
Effective search space: 385605
Effective search space used: 385605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
