BAC Information

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BAC

Clone NameMSMg01-362L05
Chromosome7 (Build37)
Map Location 97,079,500 - 97,080,011
singlet/doubletsinglet
Overlap genel7Rn6
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81
Downstream geneEed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362L05.T7 (MSMg01no362_l05.b1)MSMg01-362L05.TJ (MSMg01no362_l05.g1)
ACCAG471323AG471324
length749793
length of high quality
(start - end)		516 (46 - 561)444 (77 - 520)
definitionCHROMAT_FILE: MSMg01no362_l05.b1 PHD_FILE: MSMg01no362_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:10 2005CHROMAT_FILE: MSMg01no362_l05.g1 PHD_FILE: MSMg01no362_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGAGTACCTTTAATGTCAATGAGAAGATTATAGCCAGTAAAAG
GACTTTATTGACAAAATTAAAGATGTAGTACACTAAGAAAATTCTCAGGA
CACCTGGAAATGAAATGCGTTGGTGGACCAAACTAAGTCAAAACAAAAGT
ATGGTTCGAGGCCAGCCTGGTCTACAAATTGAGTTCCAGGACAGCCAGGG
ATATAAAGAGAAACCCTGTCTCGAAAACAAAACAAAACAAAACAAAACAA
AAGTATGTAAATAGCTTTTTTGCCTATATTACTTGCCTCTGGGAAAATGT
GGGAATGGGCAGAGTATCTTAACAGAGCATCTGGCTCTGTGGCCTAACTT
CTTTGATGACTATCAAGAACACCGATGTTGGCAGGGCACGGTACATATGT
GTGCCTTTAGCTCCAGAGGCAGAGGCAGGCCAATCTTTGTGAATTTGATG
CCAACATGGTTTACAGGATAAGTTCTAGGACAGCAAGAACTATATAGAGA
GACCCTGTCTCAAAGACTAAAATAAAACTAAAATGCCACACCACTGATGT
TAAACTTTAGTGTAAAAATTGAGACAAATATTTTCCATTCAAAATAATCA
TAAACATGTCATCTTAAATTTGTCATTATATTTAGGAATGTACTATATAA
ACCCTCCCCCTATGAAACCCTGAATATGAAATATATAAATTTACCTTCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGCCATGTTTTTTAAAAAATA
TGTACTTGCTATCTTCTTTTAAGAGTCAAGTGGTAATGATGATTCATGGG
ATGATCAAAAGGCAACCTGATTAAATGATTGGACTGATATGTAAATAAAA
GACTGGGTTTTGGGTATGCAAGAAATAGCTGTGTGTGTGTGTATATATAT
ATATAATATATATAATTTCTATTTAAGAATTTGTCAGGCTTTCTGACTTT
TGTCAGAAAATCAAAGAATTTTTTTCTAACAAGTTTTCTTGCCCCCACCC
CCATCCCCCGCCCCCGGAAAACCTATGAGCTATCCAGAGAGCTTTTAGAA
TTTTTTTCTAGCAACTGAAGAGCTGTCTCTAGCAGAGAGCTGTCTCAGCA
GAACATGACTGTCAGCTTGTTTCTATGAGTGACTTTGAGTCATTTCTTCT
GTTGTTCCCAAACACCCCTTTCTTCAGAAACCCCTCTCCAAGCTAAAGCT
GGACCTTTCATTTCCAGATGTCCCTGGCTTGTGTTATAGTGACTAATTTA
TTAATCGTCGCTCCCCTCTAACTGCCATCTTTGCGCCCTCCCCATGAGTA
GTTCCTTTATCTTCTTCTGTGTTCGCCTGATTACCCCCTGTACCGCGGAA
CCCCTAAATCCCCCTGTTTCTGGTACCCCTTCTCTCCTTTTTCGACCCAT
TTTTGTATCACAATCCCCTCCTCTTATAATTTTTTCAAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_l05.b1 MSMg01no362_l05.b1 CHROMAT_FILE:
MSMg01no362_l05.b1 PHD_FILE: MSMg01no362_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:10 2005
         (516 letters)



>mm_chr7_97079296_97080211
          Length = 916

 Score =  975 bits (504), Expect = 0.0
 Identities = 510/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagagtacctttaatgtcaatgagaagattatagccagtaaaaggactttatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagagtacctttaatgtcaatgagaagattatagccagtaaaaggactttatt 264

                                                                       
Query: 65  gacaaaattaaagatgtagtacactaagaaaattctcaggacacctggaaatgaaatgcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacaaaattaaagatgtagtacactaagaaaattctcaggacacctggaaatgaaatgcg 324

                                                                       
Query: 125 ttggtggaccaaactaagtcaaaacaaaagtatggttcgaggccagcctggtctacaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggtggaccaaactaagtcaaaacaaaagtatggttcgaggccagcctggtctacaaat 384

                                                                       
Query: 185 tgagttccaggacagccagggatataaagagaaaccctgtctcgaaaacaaaacaaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagttccaggacagccagggatataaagagaaaccctgtctcgaaaacaaaacaaaaca 444

                                                                       
Query: 245 aaacaaaacaaaagtatgtaaatagcttttttgcctatattacttgcctctgggaaaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacaaaacaaaagtatgtaaatagcttttttgcctatattacttgcctctgggaaaatg 504

                                                                       
Query: 305 tgggaatgggcagagtatcttaacagagcatctggctctgtggcctaacttctttgatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgggaatgggcagagtatcttaacagagcatctggctctgtggcctaacttctttgatga 564

                                                                       
Query: 365 ctatcaagaacaccgatgttggcagggcacggtacatatgtgtgcctttagctccagagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctatcaagaacaccgatgttggcagggcacggtacatatgtgtgcctttagctccagagg 624

                                                                       
Query: 425 cagaggcaggccaatctttgtgaatttgatgccaacatggtttacaggataagttctagg 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagaggcaggccaatctttgtgagtttgatgccaacatggtttacaggataagttctagg 684

                                           
Query: 485 acagcaagaactatatagagagaccctgtctc 516
           |||||||||||||| |||||||||||||||||
Sbjct: 685 acagcaagaactatgtagagagaccctgtctc 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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